Wall clock time and date at job start Mon Mar 30 2020 02:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30554 * 1 3 3 Si 1.86803 * 120.00008 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99839 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99696 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00037 * 3 2 1 7 7 C 1.40705 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99996 * 180.02562 * 7 2 1 9 9 N 1.32696 * 119.99540 * 359.97438 * 7 2 1 10 10 C 1.32099 * 119.99824 * 179.97438 * 9 7 2 11 11 C 1.41824 * 119.99744 * 180.28010 * 10 9 7 12 12 C 1.40412 * 120.24772 * 179.44818 * 11 10 9 13 13 C 1.37688 * 119.82521 * 179.78862 * 12 11 10 14 14 Cl 1.73598 * 119.83007 * 180.22994 * 13 12 11 15 15 C 1.38833 * 120.34386 * 0.46620 * 13 12 11 16 16 C 1.38205 * 120.51419 * 359.78503 * 15 13 12 17 17 C 1.38496 * 120.16604 * 359.97438 * 16 15 13 18 18 O 1.35663 * 120.17720 * 180.02562 * 17 16 15 19 19 H 0.97000 * 119.99450 * 0.02562 * 1 2 3 20 20 H 1.08002 * 119.99714 * 359.97438 * 10 9 7 21 21 H 1.07998 * 120.08614 * 359.97438 * 12 11 10 22 22 H 1.08002 * 119.74147 * 179.76085 * 15 13 12 23 23 H 1.07999 * 119.91725 * 179.97438 * 16 15 13 24 24 H 0.96700 * 114.00122 * 269.98085 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2396 1.6178 0.0000 4 1 2.4871 2.0464 -1.4001 5 1 1.4370 2.6527 0.7000 6 1 3.5371 1.4402 0.7000 7 6 2.0091 -1.2185 0.0005 8 1 3.0890 -1.2184 0.0010 9 7 1.3456 -2.3677 0.0016 10 6 2.0061 -3.5117 0.0016 11 6 1.2970 -4.7399 -0.0033 12 6 1.9937 -5.9589 -0.0150 13 6 1.2965 -7.1462 -0.0153 14 17 2.1578 -8.6534 -0.0237 15 6 -0.0919 -7.1443 -0.0138 16 6 -0.7919 -5.9527 -0.0076 17 6 -0.1121 -4.7461 -0.0022 18 8 -0.7991 -3.5763 0.0044 19 1 -0.4849 0.8401 -0.0004 20 1 3.0861 -3.5116 0.0003 21 1 3.0736 -5.9652 -0.0208 22 1 -0.6289 -8.0813 -0.0180 23 1 -1.8719 -5.9624 -0.0069 24 1 -0.9989 -3.2325 -0.8770 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306764370.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:02 Heat of formation + Delta-G solvation = -39.767384 kcal Electronic energy + Delta-G solvation = -12547.990738 eV Core-core repulsion = 10065.218447 eV Total energy + Delta-G solvation = -2482.772290 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.030 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.32064 -37.81208 -37.19942 -36.55634 -34.73997 -32.03258 -30.23810 -27.47709 -24.36995 -23.22738 -21.27448 -19.39478 -18.69215 -17.57065 -17.13576 -16.32547 -15.89979 -15.16651 -14.94737 -14.52209 -14.04422 -13.83806 -13.53481 -13.38200 -12.89614 -12.77681 -12.47598 -12.08311 -11.86449 -11.78290 -11.02820 -11.02046 -9.69386 -9.39749 -9.20119 -9.12450 -6.57736 0.25396 0.43644 1.26978 1.29169 1.33870 1.53397 1.93280 2.07284 2.79796 3.53880 3.79713 4.06901 4.30125 4.56282 4.63271 4.67403 4.82469 5.15619 5.26499 5.34747 5.46246 5.57012 5.80041 6.00206 6.11345 6.66812 7.25985 7.78942 8.38086 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.056569 B = 0.006245 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.854417 B = 4482.735792 C = 4965.208143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.027 3.973 3 Si 1.019 2.981 4 H -0.248 1.248 5 H -0.249 1.249 6 H -0.255 1.255 7 C -0.241 4.241 8 H 0.060 0.940 9 N -0.322 5.322 10 C -0.247 4.247 11 C 0.025 3.975 12 C -0.170 4.170 13 C -0.017 4.017 14 Cl -0.077 7.077 15 C -0.166 4.166 16 C -0.113 4.113 17 C 0.038 3.962 18 O -0.476 6.476 19 H 0.310 0.690 20 H 0.045 0.955 21 H 0.121 0.879 22 H 0.150 0.850 23 H 0.146 0.854 24 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.058 -3.306 -1.670 3.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.201 4.201 3 Si 0.834 3.166 4 H -0.172 1.172 5 H -0.173 1.173 6 H -0.178 1.178 7 C -0.406 4.406 8 H 0.078 0.922 9 N -0.034 5.034 10 C -0.408 4.408 11 C 0.023 3.977 12 C -0.191 4.191 13 C -0.044 4.044 14 Cl -0.048 7.048 15 C -0.185 4.185 16 C -0.131 4.131 17 C -0.009 4.009 18 O -0.285 6.285 19 H 0.122 0.878 20 H 0.063 0.937 21 H 0.139 0.861 22 H 0.168 0.832 23 H 0.163 0.837 24 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -1.019 -3.358 -1.053 3.664 hybrid contribution 1.420 0.478 -0.456 1.566 sum 0.401 -2.880 -1.509 3.276 Atomic orbital electron populations 1.69629 1.09875 1.33162 1.22870 1.27797 0.96072 1.05186 0.91036 0.84645 0.78632 0.72626 0.80681 1.17202 1.17275 1.17829 1.21649 0.93148 0.91015 1.34825 0.92226 1.67127 1.40496 0.98403 0.97400 1.21210 0.92698 0.90757 1.36166 1.18287 0.92957 0.92510 0.93922 1.20782 0.99404 0.89884 1.09051 1.20668 0.92664 0.85842 1.05200 1.98300 1.77466 1.31907 1.97130 1.20776 0.91223 0.98609 1.07905 1.21332 1.00625 0.90683 1.00476 1.18935 0.89305 0.86304 1.06332 1.84795 1.74501 1.36716 1.32462 0.87817 0.93715 0.86118 0.83230 0.83676 0.76848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -34.79 13.58 21.97 0.30 -34.49 14 2 C 0.03 1.22 5.53 85.49 0.47 1.70 14 3 Si 1.02 32.48 29.57 68.60 2.03 34.51 14 4 H -0.25 -7.43 7.11 99.48 0.71 -6.72 14 5 H -0.25 -7.21 7.11 99.48 0.71 -6.50 14 6 H -0.25 -8.10 7.11 99.48 0.71 -7.39 14 7 C -0.24 -12.75 9.74 85.17 0.83 -11.92 14 8 H 0.06 3.06 7.75 -2.91 -0.02 3.04 14 9 N -0.32 -18.34 7.67 -190.19 -1.46 -19.80 14 10 C -0.25 -13.65 10.16 85.54 0.87 -12.78 14 11 C 0.03 1.24 5.75 -21.21 -0.12 1.12 14 12 C -0.17 -7.27 9.55 22.67 0.22 -7.06 14 13 C -0.02 -0.64 6.31 22.28 0.14 -0.49 14 14 Cl -0.08 -2.35 28.94 -2.72 -0.08 -2.43 14 15 C -0.17 -5.69 9.82 22.40 0.22 -5.47 14 16 C -0.11 -4.24 9.97 22.32 0.22 -4.01 14 17 C 0.04 1.77 6.73 22.98 0.15 1.93 14 18 O -0.48 -23.32 11.26 -89.80 -1.01 -24.33 14 19 H 0.31 12.43 8.29 -92.71 -0.77 11.66 14 20 H 0.05 2.49 7.95 -2.91 -0.02 2.47 14 21 H 0.12 4.92 8.06 -2.91 -0.02 4.90 14 22 H 0.15 4.10 8.06 -2.91 -0.02 4.08 14 23 H 0.15 4.59 8.06 -2.91 -0.02 4.57 14 24 H 0.38 16.75 9.06 -74.06 -0.67 16.07 14 Total: -1.00 -60.69 243.12 3.35 -57.35 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.57 Total: 26.17 kcal Atomic # 6 Polarization: -39.99 SS G_CDS: 3.00 Total: -36.99 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -1.16 Total: -54.29 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -1.01 Total: -24.33 kcal Atomic # 14 Polarization: 32.48 SS G_CDS: 2.03 Total: 34.51 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -0.08 Total: -2.43 kcal Total: -60.69 3.35 -57.35 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306764370.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.580 kcal (2) G-P(sol) polarization free energy of solvation -60.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds