Wall clock time and date at job start Mon Mar 30 2020 02:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99992 * 2 1 4 4 H 1.48493 * 109.47125 * 239.99257 * 3 2 1 5 5 H 1.48502 * 109.47301 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47052 * 119.99248 * 3 2 1 7 7 C 1.37881 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00123 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99695 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.46927 * 179.97438 * 9 7 2 11 11 C 1.38260 * 119.97397 * 101.02790 * 10 9 7 12 12 C 1.38180 * 120.02555 * 180.27489 * 11 10 9 13 13 C 1.38480 * 119.97369 * 359.42791 * 12 11 10 14 14 F 1.35098 * 120.02658 * 180.29124 * 13 12 11 15 15 C 1.38442 * 119.94543 * 0.59201 * 13 12 11 16 16 C 1.38214 * 119.97586 * 359.70486 * 15 13 12 17 17 N 1.48002 * 119.99004 * 180.02562 * 16 15 13 18 18 O 1.21808 * 119.99599 * 5.88529 * 17 16 15 19 19 O 1.21797 * 120.00636 * 185.88940 * 17 16 15 20 20 H 0.96998 * 120.00099 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47235 * 59.99995 * 9 7 2 22 22 H 1.09002 * 109.47649 * 299.99876 * 9 7 2 23 23 H 1.08003 * 119.98665 * 359.97438 * 11 10 9 24 24 H 1.08006 * 120.01130 * 179.71822 * 12 11 10 25 25 H 1.08001 * 120.01309 * 179.72095 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2123 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.5051 -4.3185 1.1761 12 6 3.4071 -5.3653 1.1784 13 6 4.0271 -5.7470 0.0004 14 9 4.9047 -6.7740 0.0004 15 6 3.7515 -5.0711 -1.1760 16 6 2.8535 -4.0204 -1.1747 17 7 2.5582 -3.2981 -2.4322 18 8 3.0223 -3.6953 -3.4861 19 8 1.8513 -2.3065 -2.4135 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.0181 -4.0235 2.0939 24 1 3.6249 -5.8886 2.0978 25 1 4.2378 -5.3650 -2.0944 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306829004.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:05 Heat of formation + Delta-G solvation = -40.218126 kcal Electronic energy + Delta-G solvation = -15096.413773 eV Core-core repulsion = 12185.285562 eV Total energy + Delta-G solvation = -2911.128211 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.09494 -43.08649 -40.25593 -37.52497 -35.36869 -33.13413 -32.94015 -29.25896 -27.41574 -25.22975 -23.82866 -22.68712 -20.24053 -19.51424 -18.74475 -18.18697 -17.63582 -17.34496 -16.95437 -16.77099 -16.11573 -14.99749 -14.76731 -14.54568 -13.83153 -13.56563 -13.35206 -12.90117 -12.72718 -12.55342 -12.36311 -12.02984 -11.85038 -11.59274 -11.40228 -10.64580 -10.48903 -9.84340 -8.15479 -6.21952 -1.13480 -0.15233 0.35458 0.57445 1.41237 1.45656 1.51235 2.18804 2.46452 2.90953 3.20430 3.40660 3.56367 3.72747 3.91780 4.14252 4.58317 4.68400 4.85588 4.96339 5.23120 5.35444 5.52835 5.64025 5.73323 6.13222 6.70731 6.82840 7.41749 8.95630 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.032486 B = 0.009169 C = 0.008086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.706289 B = 3053.122125 C = 3461.955541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.951 3.049 4 H -0.281 1.281 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.503 4.503 8 H 0.043 0.957 9 C 0.045 3.955 10 C -0.006 4.006 11 C -0.093 4.093 12 C -0.072 4.072 13 C 0.086 3.914 14 F -0.124 7.124 15 C -0.097 4.097 16 C -0.044 4.044 17 N 0.025 4.975 18 O -0.203 6.203 19 O -0.148 6.148 20 H 0.265 0.735 21 H 0.033 0.967 22 H 0.028 0.972 23 H 0.175 0.825 24 H 0.196 0.804 25 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.953 -11.208 4.147 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.206 1.206 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.008 3.992 10 C -0.007 4.007 11 C -0.111 4.111 12 C -0.090 4.090 13 C 0.066 3.934 14 F -0.102 7.102 15 C -0.117 4.117 16 C -0.128 4.128 17 N 0.536 4.464 18 O -0.409 6.409 19 O -0.364 6.364 20 H 0.074 0.926 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.193 0.807 24 H 0.213 0.787 25 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 7.004 -11.507 4.678 14.260 hybrid contribution 0.230 1.139 -0.875 1.454 sum 7.234 -10.368 3.804 13.202 Atomic orbital electron populations 1.70011 1.07266 1.27792 1.50819 1.25587 0.95558 1.02122 0.94573 0.85720 0.78570 0.79372 0.78691 1.20648 1.20470 1.18871 1.20836 0.91976 0.90570 1.50741 0.93905 1.18526 0.92838 0.89559 0.98277 1.20724 0.94126 0.94723 0.91135 1.21314 0.98099 0.94343 0.97375 1.21939 0.92972 0.95562 0.98547 1.17134 0.93802 0.88959 0.93533 1.91554 1.66125 1.55450 1.97099 1.20884 0.96572 0.93270 1.00965 1.20748 1.07392 1.00145 0.84531 1.43850 0.99265 1.00588 1.02731 1.94370 1.54813 1.71214 1.20466 1.94787 1.33661 1.14470 1.93514 0.92621 0.94965 0.95346 0.80733 0.78681 0.81602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.69 13.29 21.45 0.28 -53.40 15 2 C 0.02 1.17 5.46 84.66 0.46 1.63 15 3 Si 0.95 44.05 29.54 68.60 2.03 46.08 15 4 H -0.28 -13.17 7.11 99.48 0.71 -12.47 15 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 15 7 C -0.50 -27.33 7.44 25.60 0.19 -27.14 15 8 H 0.04 2.33 7.74 -2.91 -0.02 2.30 15 9 C 0.04 2.21 4.40 29.10 0.13 2.33 15 10 C -0.01 -0.21 5.08 -19.86 -0.10 -0.32 15 11 C -0.09 -2.57 9.67 22.26 0.22 -2.35 15 12 C -0.07 -1.49 10.03 22.31 0.22 -1.27 15 13 C 0.09 2.08 7.30 22.38 0.16 2.24 15 14 F -0.12 -2.75 17.27 44.97 0.78 -1.97 15 15 C -0.10 -2.92 9.54 22.31 0.21 -2.70 15 16 C -0.04 -1.71 6.81 36.37 0.25 -1.46 15 17 N 0.02 1.14 4.45 -46.49 -0.21 0.93 15 18 O -0.20 -8.78 18.46 18.88 0.35 -8.43 15 19 O -0.15 -7.82 14.17 18.89 0.27 -7.55 15 20 H 0.26 14.68 8.31 -92.71 -0.77 13.91 15 21 H 0.03 1.80 6.16 -2.39 -0.01 1.78 15 22 H 0.03 1.40 7.99 -2.39 -0.02 1.38 15 23 H 0.18 4.04 8.03 -2.91 -0.02 4.02 15 24 H 0.20 2.23 8.06 -2.91 -0.02 2.20 15 25 H 0.17 4.51 7.62 -2.91 -0.02 4.49 15 Total: -1.00 -64.92 238.13 6.46 -58.46 By element: Atomic # 1 Polarization: -6.30 SS G_CDS: 1.23 Total: -5.08 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 1.74 Total: -29.03 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.08 Total: -52.47 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.62 Total: -15.98 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.97 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -64.92 6.46 -58.46 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306829004.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.240 kcal (2) G-P(sol) polarization free energy of solvation -64.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds