Wall clock time and date at job start Mon Mar 30 2020 02:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39035 * 119.65548 * 2 1 4 4 C 1.36237 * 120.53530 * 180.02562 * 3 2 1 5 5 C 1.41399 * 119.84530 * 0.27580 * 4 3 2 6 6 C 1.40011 * 120.32967 * 179.69932 * 5 4 3 7 7 H 1.07992 * 119.99937 * 205.37749 * 6 5 4 8 8 C 1.46608 * 119.99732 * 25.38391 * 6 5 4 9 9 N 1.29475 * 120.00330 * 12.31970 * 8 6 5 10 10 Si 1.86804 * 119.99975 * 192.32024 * 8 6 5 11 11 H 1.48496 * 109.46991 * 89.99808 * 10 8 6 12 12 H 1.48500 * 109.46940 * 210.00274 * 10 8 6 13 13 H 1.48504 * 109.46908 * 330.00068 * 10 8 6 14 14 C 1.41699 * 119.33952 * 359.45441 * 5 4 3 15 15 F 1.35100 * 120.26486 * 180.26709 * 14 5 4 16 16 C 1.38048 * 119.46101 * 0.54639 * 14 5 4 17 17 N 1.48013 * 119.92940 * 179.70556 * 16 14 5 18 18 O 1.31702 * 119.99497 * 270.01496 * 17 16 14 19 19 O 1.31696 * 120.00441 * 90.01916 * 17 16 14 20 20 H 1.08993 * 109.47614 * 90.00083 * 1 2 3 21 21 H 1.09007 * 109.46533 * 209.99830 * 1 2 3 22 22 H 1.09001 * 109.47177 * 329.99190 * 1 2 3 23 23 H 1.07999 * 119.73279 * 0.04602 * 3 2 1 24 24 H 1.08004 * 120.07799 * 180.02562 * 4 3 2 25 25 H 0.97001 * 120.00392 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1950 1.2082 0.0000 4 6 3.5572 1.2292 -0.0005 5 6 4.2796 0.0137 -0.0070 6 6 5.6797 0.0234 -0.0139 7 1 6.2235 -0.8169 -0.4194 8 6 6.4074 1.1742 0.5295 9 7 5.7797 2.0671 1.2260 10 14 8.2405 1.3525 0.2169 11 1 8.4566 2.1219 -1.0346 12 1 8.8690 2.0708 1.3546 13 1 8.8529 0.0063 0.0824 14 6 3.5726 -1.2143 -0.0011 15 9 4.2440 -2.3866 -0.0016 16 6 2.1921 -1.2029 -0.0006 17 7 1.4431 -2.4795 -0.0010 18 8 1.1098 -3.0469 -1.1419 19 8 1.1099 -3.0480 1.1392 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5139 22 1 -0.3633 0.8899 0.5140 23 1 1.6450 2.1377 0.0008 24 1 4.0841 2.1720 -0.0001 25 1 6.2612 2.8283 1.5858 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306912864.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:11 Heat of formation + Delta-G solvation = -17.457321 kcal Electronic energy + Delta-G solvation = -15075.800772 eV Core-core repulsion = 12165.659544 eV Total energy + Delta-G solvation = -2910.141229 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.82248 -38.91528 -37.35861 -34.47887 -33.72939 -31.78695 -30.35289 -28.18383 -25.75671 -23.98365 -21.36567 -20.91571 -18.58635 -17.60716 -16.65369 -16.29072 -16.16190 -15.19538 -14.58071 -14.32856 -13.88637 -13.12583 -13.08549 -12.73713 -12.12826 -12.01926 -11.70719 -11.37010 -11.07534 -10.93884 -10.85773 -10.70375 -10.32645 -10.16789 -10.09055 -9.78676 -8.36570 -7.98369 -7.45360 -4.92202 0.44136 1.84836 1.90752 2.12319 2.74657 2.76933 2.80164 3.47696 3.87406 4.78568 5.04220 5.47556 5.70893 5.87813 5.97159 6.00948 6.17378 6.17707 6.35993 6.50939 6.82501 6.88927 7.27948 7.31116 7.35197 7.45087 7.88361 7.99852 8.21513 9.41161 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.039569 B = 0.008963 C = 0.007726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.451221 B = 3123.183952 C = 3623.182502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.178 4.178 3 C -0.084 4.084 4 C -0.132 4.132 5 C 0.091 3.909 6 C -0.428 4.428 7 H 0.096 0.904 8 C 0.072 3.928 9 N -0.745 5.745 10 Si 0.932 3.068 11 H -0.259 1.259 12 H -0.270 1.270 13 H -0.253 1.253 14 C -0.015 4.015 15 F -0.147 7.147 16 C 0.031 3.969 17 N -0.017 5.017 18 O -0.163 6.163 19 O -0.164 6.164 20 H 0.060 0.940 21 H 0.048 0.952 22 H 0.067 0.933 23 H 0.117 0.883 24 H 0.142 0.858 25 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 3.639 -1.048 3.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.181 4.181 3 C -0.103 4.103 4 C -0.151 4.151 5 C 0.087 3.913 6 C -0.453 4.453 7 H 0.114 0.886 8 C -0.156 4.156 9 N -0.365 5.365 10 Si 0.754 3.246 11 H -0.183 1.183 12 H -0.194 1.194 13 H -0.176 1.176 14 C -0.036 4.036 15 F -0.126 7.126 16 C -0.051 4.051 17 N 0.477 4.523 18 O -0.368 6.368 19 O -0.368 6.368 20 H 0.079 0.921 21 H 0.067 0.933 22 H 0.086 0.914 23 H 0.135 0.865 24 H 0.159 0.841 25 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.347 4.473 -0.887 4.573 hybrid contribution 0.567 -0.527 0.027 0.774 sum 0.914 3.946 -0.859 4.141 Atomic orbital electron populations 1.20559 0.91583 1.01979 1.01413 1.18631 0.95038 0.89449 1.14982 1.20243 0.94564 0.94721 1.00792 1.21321 0.92466 0.98558 1.02801 1.17431 0.93867 0.88182 0.91867 1.20813 0.90421 1.02053 1.32032 0.88576 1.27593 1.02894 0.93536 0.91577 1.69028 1.40722 1.08133 1.18610 0.85890 0.78669 0.80541 0.79525 1.18315 1.19430 1.17608 1.17368 0.84871 0.82673 1.18732 1.91356 1.80615 1.45587 1.95053 1.19960 0.89068 0.79972 1.16087 1.50701 0.97039 1.02901 1.01647 1.96199 1.58254 1.66808 1.15555 1.96205 1.58317 1.66740 1.15580 0.92124 0.93328 0.91386 0.86540 0.84093 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 9.75 36.01 0.35 -1.42 15 2 C -0.18 -3.85 5.91 -104.25 -0.62 -4.47 15 3 C -0.08 -1.72 9.61 -40.01 -0.38 -2.11 15 4 C -0.13 -2.98 8.71 -39.10 -0.34 -3.32 15 5 C 0.09 2.24 5.62 -106.71 -0.60 1.64 15 6 C -0.43 -10.25 9.05 -35.54 -0.32 -10.57 15 7 H 0.10 2.28 7.81 -52.49 -0.41 1.87 15 8 C 0.07 1.54 5.41 -15.17 -0.08 1.45 15 9 N -0.75 -15.92 10.84 55.99 0.61 -15.31 15 10 Si 0.93 15.80 29.66 -169.99 -5.04 10.76 15 11 H -0.26 -4.28 7.11 56.52 0.40 -3.88 15 12 H -0.27 -4.41 7.11 56.52 0.40 -4.01 15 13 H -0.25 -4.38 7.11 56.52 0.40 -3.98 15 14 C -0.01 -0.38 7.33 -38.33 -0.28 -0.66 15 15 F -0.15 -3.84 16.58 2.25 0.04 -3.80 15 16 C 0.03 0.74 6.23 -79.95 -0.50 0.24 15 17 N -0.02 -0.42 3.61 33.96 0.12 -0.29 15 18 O -0.16 -3.88 19.97 -31.57 -0.63 -4.51 15 19 O -0.16 -3.94 19.90 -31.57 -0.63 -4.57 15 20 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 21 H 0.05 0.91 7.34 -51.92 -0.38 0.53 15 22 H 0.07 1.04 8.08 -51.93 -0.42 0.62 15 23 H 0.12 1.98 8.06 -52.49 -0.42 1.56 15 24 H 0.14 3.10 6.05 -52.48 -0.32 2.78 15 25 H 0.30 5.58 8.27 -40.82 -0.34 5.24 15 LS Contribution 243.25 15.07 3.67 3.67 Total: -1.00 -25.78 243.25 -6.15 -31.93 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -1.51 Total: 1.32 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -2.77 Total: -19.20 kcal Atomic # 7 Polarization: -16.34 SS G_CDS: 0.73 Total: -15.61 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -1.26 Total: -9.07 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.04 Total: -3.80 kcal Atomic # 14 Polarization: 15.80 SS G_CDS: -5.04 Total: 10.76 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -25.78 -6.15 -31.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306912864.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.473 kcal (2) G-P(sol) polarization free energy of solvation -25.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds