Wall clock time and date at job start Mon Mar 30 2020 02:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39035 * 119.65548 * 2 1 4 4 C 1.36237 * 120.53530 * 180.02562 * 3 2 1 5 5 C 1.41399 * 119.84530 * 0.27580 * 4 3 2 6 6 C 1.40011 * 120.32967 * 179.69932 * 5 4 3 7 7 H 1.07992 * 119.99937 * 205.37749 * 6 5 4 8 8 C 1.46608 * 119.99732 * 25.38391 * 6 5 4 9 9 N 1.29475 * 120.00330 * 12.31970 * 8 6 5 10 10 Si 1.86804 * 119.99975 * 192.32024 * 8 6 5 11 11 H 1.48496 * 109.46991 * 89.99808 * 10 8 6 12 12 H 1.48500 * 109.46940 * 210.00274 * 10 8 6 13 13 H 1.48504 * 109.46908 * 330.00068 * 10 8 6 14 14 C 1.41699 * 119.33952 * 359.45441 * 5 4 3 15 15 F 1.35100 * 120.26486 * 180.26709 * 14 5 4 16 16 C 1.38048 * 119.46101 * 0.54639 * 14 5 4 17 17 N 1.48013 * 119.92940 * 179.70556 * 16 14 5 18 18 O 1.31702 * 119.99497 * 270.01496 * 17 16 14 19 19 O 1.31696 * 120.00441 * 90.01916 * 17 16 14 20 20 H 1.08993 * 109.47614 * 90.00083 * 1 2 3 21 21 H 1.09007 * 109.46533 * 209.99830 * 1 2 3 22 22 H 1.09001 * 109.47177 * 329.99190 * 1 2 3 23 23 H 1.07999 * 119.73279 * 0.04602 * 3 2 1 24 24 H 1.08004 * 120.07799 * 180.02562 * 4 3 2 25 25 H 0.97001 * 120.00392 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1950 1.2082 0.0000 4 6 3.5572 1.2292 -0.0005 5 6 4.2796 0.0137 -0.0070 6 6 5.6797 0.0234 -0.0139 7 1 6.2235 -0.8169 -0.4194 8 6 6.4074 1.1742 0.5295 9 7 5.7797 2.0671 1.2260 10 14 8.2405 1.3525 0.2169 11 1 8.4566 2.1219 -1.0346 12 1 8.8690 2.0708 1.3546 13 1 8.8529 0.0063 0.0824 14 6 3.5726 -1.2143 -0.0011 15 9 4.2440 -2.3866 -0.0016 16 6 2.1921 -1.2029 -0.0006 17 7 1.4431 -2.4795 -0.0010 18 8 1.1098 -3.0469 -1.1419 19 8 1.1099 -3.0480 1.1392 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5139 22 1 -0.3633 0.8899 0.5140 23 1 1.6450 2.1377 0.0008 24 1 4.0841 2.1720 -0.0001 25 1 6.2612 2.8283 1.5858 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306912864.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:10 Heat of formation + Delta-G solvation = -30.153059 kcal Electronic energy + Delta-G solvation = -15076.351301 eV Core-core repulsion = 12165.659544 eV Total energy + Delta-G solvation = -2910.691757 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.74565 -40.73738 -39.17042 -36.16041 -35.63926 -33.46392 -32.12930 -29.81658 -27.60965 -25.65187 -23.16888 -22.64371 -20.36037 -19.52698 -18.46388 -18.11112 -17.92229 -16.83190 -16.50156 -16.20833 -15.45979 -14.75286 -14.59405 -14.36948 -13.80690 -13.62799 -13.19871 -12.94021 -12.78340 -12.72083 -12.58403 -12.25966 -12.03880 -12.00130 -11.88560 -11.34240 -10.15109 -9.73348 -9.07464 -6.71946 -1.44841 0.03693 0.04922 0.42604 1.34533 1.40350 1.49137 2.08406 2.24755 3.02266 3.28780 3.89960 4.07099 4.14227 4.29419 4.48102 4.59305 4.63241 4.74212 4.95442 5.10629 5.15828 5.42093 5.54403 5.58338 5.72610 6.14042 6.23057 6.44650 7.83604 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.039569 B = 0.008963 C = 0.007726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.451221 B = 3123.183952 C = 3623.182502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.171 4.171 3 C -0.076 4.076 4 C -0.135 4.135 5 C 0.069 3.931 6 C -0.461 4.461 7 H 0.082 0.918 8 C 0.044 3.956 9 N -0.761 5.761 10 Si 1.001 2.999 11 H -0.248 1.248 12 H -0.253 1.253 13 H -0.264 1.264 14 C -0.067 4.067 15 F -0.163 7.163 16 C 0.010 3.990 17 N -0.017 5.017 18 O -0.161 6.161 19 O -0.175 6.175 20 H 0.077 0.923 21 H 0.036 0.964 22 H 0.103 0.897 23 H 0.162 0.838 24 H 0.147 0.853 25 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.191 5.806 -1.036 5.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.174 4.174 3 C -0.095 4.095 4 C -0.154 4.154 5 C 0.065 3.935 6 C -0.485 4.485 7 H 0.101 0.899 8 C -0.183 4.183 9 N -0.381 5.381 10 Si 0.819 3.181 11 H -0.171 1.171 12 H -0.176 1.176 13 H -0.188 1.188 14 C -0.089 4.089 15 F -0.142 7.142 16 C -0.071 4.071 17 N 0.477 4.523 18 O -0.367 6.367 19 O -0.377 6.377 20 H 0.096 0.904 21 H 0.055 0.945 22 H 0.121 0.879 23 H 0.180 0.820 24 H 0.165 0.835 25 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.206 6.644 -0.845 6.701 hybrid contribution 0.536 -1.136 0.025 1.256 sum 0.742 5.508 -0.819 5.618 Atomic orbital electron populations 1.20666 0.88730 1.03145 1.02847 1.19267 0.97153 0.88687 1.12251 1.20696 0.93967 0.96026 0.98797 1.21497 0.93538 0.97846 1.02471 1.17789 0.94587 0.88759 0.92365 1.21036 0.90725 1.03345 1.33417 0.89938 1.28341 1.06826 0.92349 0.90753 1.68969 1.42731 1.08449 1.17946 0.84906 0.72925 0.80032 0.80246 1.17130 1.17638 1.18799 1.17688 0.85654 0.82713 1.22805 1.91284 1.81043 1.46394 1.95522 1.20341 0.88959 0.80630 1.17151 1.50786 0.96913 1.03048 1.01551 1.96176 1.58122 1.66815 1.15619 1.96191 1.58881 1.66954 1.15668 0.90431 0.94525 0.87851 0.82024 0.83547 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.19 9.75 71.24 0.69 -2.50 15 2 C -0.17 -7.07 5.91 -19.62 -0.12 -7.18 15 3 C -0.08 -2.92 9.61 21.99 0.21 -2.70 15 4 C -0.13 -5.92 8.71 22.58 0.20 -5.73 15 5 C 0.07 3.48 5.62 -21.22 -0.12 3.36 15 6 C -0.46 -22.58 9.05 24.89 0.23 -22.35 15 7 H 0.08 4.12 7.81 -2.91 -0.02 4.09 15 8 C 0.04 1.84 5.41 87.23 0.47 2.32 15 9 N -0.76 -31.46 10.84 23.23 0.25 -31.21 15 10 Si 1.00 31.24 29.66 68.60 2.03 33.28 15 11 H -0.25 -7.27 7.11 99.48 0.71 -6.56 15 12 H -0.25 -7.18 7.11 99.48 0.71 -6.47 15 13 H -0.26 -8.65 7.11 99.48 0.71 -7.95 15 14 C -0.07 -3.54 7.33 23.08 0.17 -3.37 15 15 F -0.16 -8.96 16.58 44.97 0.75 -8.21 15 16 C 0.01 0.51 6.23 36.38 0.23 0.73 15 17 N -0.02 -0.82 3.61 -46.46 -0.17 -0.99 15 18 O -0.16 -7.64 19.97 3.51 0.07 -7.57 15 19 O -0.17 -8.48 19.90 3.52 0.07 -8.41 15 20 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 21 H 0.04 1.29 7.34 -2.38 -0.02 1.27 15 22 H 0.10 2.67 8.08 -2.39 -0.02 2.65 15 23 H 0.16 4.69 8.06 -2.91 -0.02 4.67 15 24 H 0.15 6.21 6.05 -2.91 -0.02 6.19 15 25 H 0.32 11.06 8.27 -92.71 -0.77 10.30 15 Total: -1.00 -56.22 243.25 6.20 -50.03 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.23 Total: 10.50 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 1.96 Total: -37.42 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.08 Total: -32.19 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.14 Total: -15.98 kcal Atomic # 9 Polarization: -8.96 SS G_CDS: 0.75 Total: -8.21 kcal Atomic # 14 Polarization: 31.24 SS G_CDS: 2.03 Total: 33.28 kcal Total: -56.22 6.20 -50.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306912864.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.872 kcal (2) G-P(sol) polarization free energy of solvation -56.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds