Wall clock time and date at job start Mon Mar 30 2020 02:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36488 * 120.06516 * 2 1 4 4 C 1.38720 * 120.44973 * 180.02562 * 3 2 1 5 5 C 1.39067 * 120.56826 * 0.29958 * 4 3 2 6 6 F 1.35099 * 119.93887 * 179.72355 * 5 4 3 7 7 C 1.37682 * 120.12075 * 359.44525 * 5 4 3 8 8 N 1.48009 * 120.22748 * 180.27505 * 7 5 4 9 9 O 1.31702 * 119.99828 * 266.35333 * 8 7 5 10 10 O 1.31702 * 120.00200 * 86.35642 * 8 7 5 11 11 C 1.41250 * 120.06542 * 180.02562 * 2 1 3 12 12 C 1.40350 * 120.28365 * 359.95469 * 11 2 1 13 13 H 1.07995 * 120.00161 * 226.69787 * 12 11 2 14 14 C 1.46534 * 119.99654 * 46.69388 * 12 11 2 15 15 N 1.29515 * 120.00375 * 19.61088 * 14 12 11 16 16 Si 1.86802 * 120.00107 * 199.61136 * 14 12 11 17 17 H 1.48506 * 109.47021 * 89.99887 * 16 14 12 18 18 H 1.48495 * 109.47438 * 210.00076 * 16 14 12 19 19 H 1.48498 * 109.47006 * 330.00350 * 16 14 12 20 20 H 1.08997 * 109.47422 * 89.99942 * 1 2 3 21 21 H 1.09007 * 109.46941 * 209.99641 * 1 2 3 22 22 H 1.08998 * 109.47133 * 329.99492 * 1 2 3 23 23 H 1.08000 * 119.77767 * 0.02701 * 3 2 1 24 24 H 1.07997 * 119.71168 * 180.02562 * 4 3 2 25 25 H 0.96997 * 120.00130 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1909 1.1812 0.0000 4 6 3.5780 1.1906 -0.0005 5 6 4.2933 -0.0020 -0.0073 6 9 5.6440 0.0219 -0.0134 7 6 3.6274 -1.2071 -0.0021 8 7 4.3863 -2.4778 -0.0032 9 8 4.6565 -3.0824 -1.1416 10 8 4.7914 -3.0039 1.1342 11 6 2.2147 -1.2225 -0.0005 12 6 1.5204 -2.4422 -0.0001 13 1 1.8111 -3.2288 0.6803 14 6 0.4009 -2.6482 -0.9229 15 7 0.2815 -1.9003 -1.9735 16 14 -0.8543 -3.9895 -0.5839 17 1 -1.9592 -3.4368 0.2402 18 1 -1.4000 -4.4932 -1.8698 19 1 -0.2014 -5.1048 0.1476 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3633 0.8899 0.5139 23 1 1.6483 2.1151 0.0004 24 1 4.1070 2.1321 -0.0001 25 1 -0.4594 -2.0369 -2.5845 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306937051.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:25 Heat of formation + Delta-G solvation = -14.249468 kcal Electronic energy + Delta-G solvation = -15360.826719 eV Core-core repulsion = 12450.824594 eV Total energy + Delta-G solvation = -2910.002126 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.42414 -38.72799 -37.24986 -34.22688 -33.32458 -31.48382 -30.86028 -27.25235 -25.48526 -24.65687 -21.43604 -20.52801 -18.29288 -17.22763 -17.11134 -16.19162 -15.94584 -15.29505 -15.01303 -14.15899 -13.71262 -13.30458 -13.03027 -12.87553 -12.09038 -11.77795 -11.65933 -11.14684 -11.05405 -10.85853 -10.71933 -10.44160 -10.38578 -9.92459 -9.71707 -9.45620 -8.38579 -7.75726 -7.35466 -5.10374 0.85553 1.83086 2.13084 2.34819 2.78923 2.81587 2.86010 3.56449 3.95954 4.51812 4.86196 5.53390 5.77910 5.91617 6.02263 6.28085 6.39198 6.47129 6.60118 6.71070 6.84446 6.98846 7.08599 7.38009 7.43692 7.72903 7.82560 7.96014 8.14847 9.51861 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.027164 B = 0.012826 C = 0.009598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.514551 B = 2182.491611 C = 2916.518349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.126 4.126 3 C -0.055 4.055 4 C -0.255 4.255 5 C 0.164 3.836 6 F -0.150 7.150 7 C -0.147 4.147 8 N 0.011 4.989 9 O -0.157 6.157 10 O -0.189 6.189 11 C 0.167 3.833 12 C -0.470 4.470 13 H 0.095 0.905 14 C 0.085 3.915 15 N -0.737 5.737 16 Si 0.919 3.081 17 H -0.258 1.258 18 H -0.270 1.270 19 H -0.253 1.253 20 H 0.073 0.927 21 H 0.063 0.937 22 H 0.039 0.961 23 H 0.117 0.883 24 H 0.124 0.876 25 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.882 3.434 1.058 5.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C -0.074 4.074 4 C -0.276 4.276 5 C 0.144 3.856 6 F -0.129 7.129 7 C -0.230 4.230 8 N 0.506 4.494 9 O -0.366 6.366 10 O -0.389 6.389 11 C 0.163 3.837 12 C -0.496 4.496 13 H 0.112 0.888 14 C -0.144 4.144 15 N -0.357 5.357 16 Si 0.740 3.260 17 H -0.182 1.182 18 H -0.194 1.194 19 H -0.176 1.176 20 H 0.091 0.909 21 H 0.082 0.918 22 H 0.058 0.942 23 H 0.135 0.865 24 H 0.142 0.858 25 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.340 4.133 0.870 6.056 hybrid contribution 0.095 -0.880 -0.030 0.886 sum -4.245 3.253 0.839 5.414 Atomic orbital electron populations 1.20670 0.91443 1.00378 1.01892 1.19737 0.95846 0.91095 1.06119 1.20325 0.92663 0.97456 0.96911 1.20341 0.94465 0.94358 1.18410 1.17004 0.75535 0.92305 1.00805 1.91443 1.29934 1.97469 1.94008 1.20358 0.92215 0.77979 1.32497 1.50078 0.95983 1.02207 1.01139 1.96172 1.60459 1.63956 1.16047 1.96160 1.56744 1.69744 1.16213 1.16726 0.85307 0.94569 0.87075 1.20691 1.11812 0.99405 1.17681 0.88754 1.27280 0.97050 0.97118 0.92919 1.69112 1.26621 1.33219 1.06728 0.86103 0.79559 0.80648 0.79649 1.18248 1.19416 1.17639 0.90895 0.91808 0.94187 0.86523 0.85776 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 8.26 36.01 0.30 -1.38 15 2 C -0.13 -2.77 5.60 -104.11 -0.58 -3.35 15 3 C -0.06 -1.08 9.61 -40.03 -0.38 -1.46 15 4 C -0.26 -5.18 10.04 -39.10 -0.39 -5.57 15 5 C 0.16 3.85 7.29 -39.48 -0.29 3.57 15 6 F -0.15 -3.46 17.09 2.25 0.04 -3.43 15 7 C -0.15 -3.78 6.32 -79.00 -0.50 -4.27 15 8 N 0.01 0.29 4.14 34.42 0.14 0.44 15 9 O -0.16 -4.24 19.97 -31.57 -0.63 -4.87 15 10 O -0.19 -4.96 19.97 -31.57 -0.63 -5.59 15 11 C 0.17 4.18 5.29 -106.80 -0.57 3.62 15 12 C -0.47 -11.71 8.03 -35.45 -0.28 -12.00 15 13 H 0.09 2.43 8.00 -52.49 -0.42 2.01 15 14 C 0.09 1.89 3.63 -15.19 -0.06 1.84 15 15 N -0.74 -16.46 10.86 55.98 0.61 -15.85 15 16 Si 0.92 16.74 29.68 -169.99 -5.05 11.70 15 17 H -0.26 -4.47 7.11 56.52 0.40 -4.06 15 18 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 19 H -0.25 -4.79 7.11 56.52 0.40 -4.39 15 20 H 0.07 1.42 6.60 -51.93 -0.34 1.08 15 21 H 0.06 1.26 6.37 -51.93 -0.33 0.93 15 22 H 0.04 0.64 8.08 -51.93 -0.42 0.22 15 23 H 0.12 1.86 8.06 -52.49 -0.42 1.43 15 24 H 0.12 2.13 8.06 -52.49 -0.42 1.71 15 25 H 0.30 5.85 8.27 -40.82 -0.34 5.52 15 LS Contribution 240.53 15.07 3.62 3.62 Total: -1.00 -26.76 240.53 -6.14 -32.90 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -1.49 Total: 0.10 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -2.75 Total: -19.02 kcal Atomic # 7 Polarization: -16.17 SS G_CDS: 0.75 Total: -15.42 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -1.26 Total: -10.46 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.04 Total: -3.43 kcal Atomic # 14 Polarization: 16.74 SS G_CDS: -5.05 Total: 11.70 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -26.76 -6.14 -32.90 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306937051.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.651 kcal (2) G-P(sol) polarization free energy of solvation -26.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds