Wall clock time and date at job start Mon Mar 30 2020 02:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36488 * 120.06516 * 2 1 4 4 C 1.38720 * 120.44973 * 180.02562 * 3 2 1 5 5 C 1.39067 * 120.56826 * 0.29958 * 4 3 2 6 6 F 1.35099 * 119.93887 * 179.72355 * 5 4 3 7 7 C 1.37682 * 120.12075 * 359.44525 * 5 4 3 8 8 N 1.48009 * 120.22748 * 180.27505 * 7 5 4 9 9 O 1.31702 * 119.99828 * 266.35333 * 8 7 5 10 10 O 1.31702 * 120.00200 * 86.35642 * 8 7 5 11 11 C 1.41250 * 120.06542 * 180.02562 * 2 1 3 12 12 C 1.40350 * 120.28365 * 359.95469 * 11 2 1 13 13 H 1.07995 * 120.00161 * 226.69787 * 12 11 2 14 14 C 1.46534 * 119.99654 * 46.69388 * 12 11 2 15 15 N 1.29515 * 120.00375 * 19.61088 * 14 12 11 16 16 Si 1.86802 * 120.00107 * 199.61136 * 14 12 11 17 17 H 1.48506 * 109.47021 * 89.99887 * 16 14 12 18 18 H 1.48495 * 109.47438 * 210.00076 * 16 14 12 19 19 H 1.48498 * 109.47006 * 330.00350 * 16 14 12 20 20 H 1.08997 * 109.47422 * 89.99942 * 1 2 3 21 21 H 1.09007 * 109.46941 * 209.99641 * 1 2 3 22 22 H 1.08998 * 109.47133 * 329.99492 * 1 2 3 23 23 H 1.08000 * 119.77767 * 0.02701 * 3 2 1 24 24 H 1.07997 * 119.71168 * 180.02562 * 4 3 2 25 25 H 0.96997 * 120.00130 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1909 1.1812 0.0000 4 6 3.5780 1.1906 -0.0005 5 6 4.2933 -0.0020 -0.0073 6 9 5.6440 0.0219 -0.0134 7 6 3.6274 -1.2071 -0.0021 8 7 4.3863 -2.4778 -0.0032 9 8 4.6565 -3.0824 -1.1416 10 8 4.7914 -3.0039 1.1342 11 6 2.2147 -1.2225 -0.0005 12 6 1.5204 -2.4422 -0.0001 13 1 1.8111 -3.2288 0.6803 14 6 0.4009 -2.6482 -0.9229 15 7 0.2815 -1.9003 -1.9735 16 14 -0.8543 -3.9895 -0.5839 17 1 -1.9592 -3.4368 0.2402 18 1 -1.4000 -4.4932 -1.8698 19 1 -0.2014 -5.1048 0.1476 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3633 0.8899 0.5139 23 1 1.6483 2.1151 0.0004 24 1 4.1070 2.1321 -0.0001 25 1 -0.4594 -2.0369 -2.5845 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306937051.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:25 Heat of formation + Delta-G solvation = -28.351287 kcal Electronic energy + Delta-G solvation = -15361.438220 eV Core-core repulsion = 12450.824594 eV Total energy + Delta-G solvation = -2910.613626 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.21033 -40.56675 -39.18301 -35.91970 -35.43466 -33.21416 -32.57361 -29.03062 -27.23980 -26.45860 -23.16756 -22.32624 -20.04372 -19.32859 -19.01204 -17.98519 -17.71986 -16.91578 -16.79582 -16.11897 -15.30567 -14.88346 -14.70168 -14.50094 -13.74141 -13.44453 -13.21592 -12.81199 -12.66014 -12.57502 -12.41664 -12.28352 -12.10889 -11.85637 -11.76122 -11.07653 -10.11932 -9.47356 -9.01883 -6.91291 -1.23174 0.05855 0.38087 0.45046 1.31519 1.34015 1.43228 2.07710 2.30581 2.78879 3.12192 3.91867 4.14525 4.18745 4.43618 4.58920 4.74507 4.89199 5.06746 5.08625 5.10377 5.32716 5.47460 5.62718 5.67248 5.75937 6.06254 6.20670 6.40395 7.89862 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.027164 B = 0.012826 C = 0.009598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.514551 B = 2182.491611 C = 2916.518349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.136 4.136 3 C -0.047 4.047 4 C -0.231 4.231 5 C 0.136 3.864 6 F -0.154 7.154 7 C -0.190 4.190 8 N 0.012 4.988 9 O -0.186 6.186 10 O -0.189 6.189 11 C 0.144 3.856 12 C -0.508 4.508 13 H 0.067 0.933 14 C 0.061 3.939 15 N -0.756 5.756 16 Si 0.978 3.022 17 H -0.237 1.237 18 H -0.255 1.255 19 H -0.272 1.272 20 H 0.070 0.930 21 H 0.052 0.948 22 H 0.077 0.923 23 H 0.168 0.832 24 H 0.164 0.836 25 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.721 5.412 1.023 7.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 C -0.065 4.065 4 C -0.250 4.250 5 C 0.116 3.884 6 F -0.133 7.133 7 C -0.273 4.273 8 N 0.505 4.495 9 O -0.390 6.390 10 O -0.392 6.392 11 C 0.140 3.860 12 C -0.533 4.533 13 H 0.085 0.915 14 C -0.166 4.166 15 N -0.377 5.377 16 Si 0.797 3.203 17 H -0.160 1.160 18 H -0.178 1.178 19 H -0.197 1.197 20 H 0.088 0.912 21 H 0.071 0.929 22 H 0.095 0.905 23 H 0.185 0.815 24 H 0.182 0.818 25 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.173 6.128 0.781 8.733 hybrid contribution 0.707 -1.378 0.014 1.549 sum -5.466 4.750 0.796 7.285 Atomic orbital electron populations 1.20666 0.89529 1.01681 1.02012 1.20178 0.97398 0.90734 1.05415 1.20872 0.92484 0.98612 0.94496 1.20924 0.95037 0.94473 1.14592 1.17410 0.75684 0.92690 1.02640 1.91422 1.30174 1.97484 1.94204 1.20916 0.93039 0.77739 1.35605 1.50378 0.95615 1.02713 1.00769 1.96144 1.61701 1.64826 1.16291 1.96119 1.56691 1.70039 1.16367 1.17177 0.85119 0.96102 0.87597 1.20703 1.14286 0.99243 1.19053 0.91500 1.27865 0.97670 0.99027 0.92050 1.69070 1.27463 1.34194 1.06926 0.85266 0.77590 0.77421 0.80073 1.16019 1.17823 1.19677 0.91152 0.92910 0.90476 0.81508 0.81839 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.93 8.26 71.24 0.59 -2.34 15 2 C -0.14 -5.66 5.60 -19.53 -0.11 -5.77 15 3 C -0.05 -1.64 9.61 21.98 0.21 -1.42 15 4 C -0.23 -8.58 10.04 22.58 0.23 -8.35 15 5 C 0.14 6.31 7.29 22.34 0.16 6.48 15 6 F -0.15 -7.10 17.09 44.97 0.77 -6.33 15 7 C -0.19 -9.95 6.32 36.99 0.23 -9.71 15 8 N 0.01 0.68 4.14 -45.01 -0.19 0.50 15 9 O -0.19 -10.47 19.97 3.51 0.07 -10.40 15 10 O -0.19 -10.29 19.97 3.51 0.07 -10.22 15 11 C 0.14 7.25 5.29 -21.28 -0.11 7.14 15 12 C -0.51 -25.96 8.03 24.95 0.20 -25.76 15 13 H 0.07 3.65 8.00 -2.91 -0.02 3.63 15 14 C 0.06 2.70 3.63 87.20 0.32 3.02 15 15 N -0.76 -33.13 10.86 23.21 0.25 -32.87 15 16 Si 0.98 33.75 29.68 68.60 2.04 35.79 15 17 H -0.24 -7.35 7.11 99.48 0.71 -6.64 15 18 H -0.25 -8.11 7.11 99.48 0.71 -7.40 15 19 H -0.27 -10.15 7.11 99.48 0.71 -9.44 15 20 H 0.07 2.55 6.60 -2.39 -0.02 2.54 15 21 H 0.05 1.99 6.37 -2.38 -0.02 1.97 15 22 H 0.08 2.13 8.08 -2.39 -0.02 2.11 15 23 H 0.17 4.20 8.06 -2.91 -0.02 4.18 15 24 H 0.16 4.77 8.06 -2.91 -0.02 4.75 15 25 H 0.31 11.79 8.27 -92.71 -0.77 11.02 15 Total: -1.00 -59.52 240.53 5.96 -53.56 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 1.23 Total: 6.71 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 1.72 Total: -36.73 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.07 Total: -32.38 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.14 Total: -20.62 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 0.77 Total: -6.33 kcal Atomic # 14 Polarization: 33.75 SS G_CDS: 2.04 Total: 35.79 kcal Total: -59.52 5.96 -53.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306937051.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.209 kcal (2) G-P(sol) polarization free energy of solvation -59.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds