Wall clock time and date at job start Mon Mar 30 2020 02:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38270 * 119.98337 * 264.99340 * 10 9 7 12 12 C 1.38227 * 120.04816 * 179.97438 * 11 10 9 13 13 C 1.38215 * 120.02658 * 0.02562 * 12 11 10 14 14 C 1.38445 * 119.97352 * 359.97438 * 13 12 11 15 15 F 1.35096 * 120.02242 * 180.02562 * 14 13 12 16 16 C 1.38169 * 119.99070 * 84.72358 * 10 9 7 17 17 N 1.48010 * 120.01064 * 359.97438 * 16 10 9 18 18 O 1.21802 * 119.99900 * 90.00063 * 17 16 10 19 19 O 1.21797 * 120.00101 * 270.00448 * 17 16 10 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08002 * 119.97884 * 0.02562 * 11 10 9 24 24 H 1.07997 * 119.98401 * 180.02562 * 12 11 10 25 25 H 1.07995 * 120.01151 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.3377 -3.2292 1.2064 12 6 4.7980 -4.5326 1.2125 13 6 4.9355 -5.2231 0.0231 14 6 4.6115 -4.6090 -1.1747 15 9 4.7451 -5.2832 -2.3377 16 6 4.1452 -3.3052 -1.1790 17 7 3.7923 -2.6495 -2.4581 18 8 4.6376 -2.0294 -3.0783 19 8 2.6565 -2.7298 -2.8906 20 1 -0.4849 0.8400 0.0004 21 1 3.8786 -0.6821 -0.8838 22 1 3.8711 -0.6785 0.8962 23 1 4.2301 -2.6906 2.1363 24 1 5.0502 -5.0115 2.1470 25 1 5.2956 -6.2413 0.0281 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306949036.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:07 Heat of formation + Delta-G solvation = -45.900304 kcal Electronic energy + Delta-G solvation = -15231.118434 eV Core-core repulsion = 12319.743825 eV Total energy + Delta-G solvation = -2911.374609 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.50686 -43.27110 -40.37274 -37.64203 -35.67889 -33.78089 -32.61836 -29.96339 -27.57070 -25.33039 -23.70436 -22.68062 -20.34907 -19.96411 -19.14225 -19.01172 -18.32157 -17.20261 -17.13952 -16.48697 -16.20333 -15.28976 -14.99701 -14.43564 -13.98060 -13.81766 -13.41529 -13.16454 -12.86127 -12.64546 -12.48154 -12.31504 -12.08778 -11.96837 -11.76064 -10.90686 -10.53786 -9.97355 -8.40337 -6.49061 -0.66880 -0.51584 -0.14557 0.32982 1.27825 1.32112 1.39542 2.18196 2.24657 2.56932 2.93380 3.32034 3.59313 3.85030 4.00667 4.16059 4.36656 4.68272 4.72102 4.79921 5.02256 5.08899 5.24210 5.32051 5.53736 6.05713 6.34997 6.55910 7.15015 8.75716 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.031326 B = 0.010438 C = 0.009030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.602451 B = 2681.923229 C = 3099.894995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.020 3.980 3 Si 0.938 3.062 4 H -0.278 1.278 5 H -0.271 1.271 6 H -0.235 1.235 7 C -0.527 4.527 8 H 0.034 0.966 9 C 0.006 3.994 10 C 0.003 3.997 11 C -0.116 4.116 12 C -0.028 4.028 13 C -0.137 4.137 14 C 0.122 3.878 15 F -0.137 7.137 16 C -0.096 4.096 17 N 0.029 4.971 18 O -0.149 6.149 19 O -0.171 6.171 20 H 0.271 0.729 21 H 0.009 0.991 22 H 0.070 0.930 23 H 0.173 0.827 24 H 0.207 0.793 25 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.339 -9.251 5.539 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.179 4.179 3 Si 0.760 3.240 4 H -0.204 1.204 5 H -0.196 1.196 6 H -0.158 1.158 7 C -0.565 4.565 8 H 0.052 0.948 9 C -0.031 4.031 10 C 0.002 3.998 11 C -0.134 4.134 12 C -0.045 4.045 13 C -0.156 4.156 14 C 0.101 3.899 15 F -0.115 7.115 16 C -0.177 4.177 17 N 0.556 4.444 18 O -0.374 6.374 19 O -0.389 6.389 20 H 0.080 0.920 21 H 0.027 0.973 22 H 0.088 0.912 23 H 0.190 0.810 24 H 0.224 0.776 25 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 13.334 -9.525 6.164 17.508 hybrid contribution -0.559 1.103 -1.328 1.815 sum 12.775 -8.422 4.836 16.047 Atomic orbital electron populations 1.70013 1.08140 1.28542 1.50622 1.25856 0.95601 1.03044 0.93409 0.85852 0.80216 0.78845 0.79070 1.20418 1.19617 1.15839 1.20833 0.89327 0.93571 1.52750 0.94796 1.18899 0.95772 0.89492 0.98937 1.20009 0.91582 0.97522 0.90665 1.21609 0.98676 0.96701 0.96443 1.21949 0.90888 0.91916 0.99724 1.21662 1.02421 1.03314 0.88157 1.17637 1.01265 0.86609 0.84362 1.91534 1.93519 1.79290 1.47162 1.21187 1.16832 0.95545 0.84159 1.43658 0.99796 0.98561 1.02353 1.94417 1.44554 1.39499 1.58933 1.94589 1.06486 1.65737 1.72075 0.91978 0.97280 0.91224 0.80979 0.77586 0.78498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.46 13.96 21.45 0.30 -58.17 15 2 C 0.02 1.18 5.47 84.66 0.46 1.64 15 3 Si 0.94 43.77 27.47 68.60 1.88 45.65 15 4 H -0.28 -13.27 7.11 99.48 0.71 -12.57 15 5 H -0.27 -12.10 7.11 99.48 0.71 -11.40 15 6 H -0.24 -9.75 6.54 99.48 0.65 -9.10 15 7 C -0.53 -30.20 9.65 25.60 0.25 -29.96 15 8 H 0.03 2.18 7.98 -2.91 -0.02 2.16 15 9 C 0.01 0.29 3.86 29.10 0.11 0.40 15 10 C 0.00 0.13 5.07 -19.87 -0.10 0.03 15 11 C -0.12 -3.03 9.68 22.27 0.22 -2.82 15 12 C -0.03 -0.46 10.04 22.26 0.22 -0.24 15 13 C -0.14 -2.70 10.03 22.31 0.22 -2.48 15 14 C 0.12 3.86 7.30 22.38 0.16 4.02 15 15 F -0.14 -4.54 17.10 44.97 0.77 -3.77 15 16 C -0.10 -3.88 6.13 36.42 0.22 -3.66 15 17 N 0.03 1.37 3.22 -46.37 -0.15 1.23 15 18 O -0.15 -6.92 19.17 18.88 0.36 -6.56 15 19 O -0.17 -9.02 19.25 18.89 0.36 -8.66 15 20 H 0.27 15.74 8.31 -92.71 -0.77 14.97 15 21 H 0.01 0.45 6.97 -2.38 -0.02 0.43 15 22 H 0.07 2.89 7.10 -2.39 -0.02 2.87 15 23 H 0.17 3.67 8.06 -2.91 -0.02 3.65 15 24 H 0.21 1.13 8.06 -2.91 -0.02 1.10 15 25 H 0.20 2.09 8.06 -2.91 -0.02 2.07 15 Total: -1.00 -75.60 242.68 6.47 -69.14 By element: Atomic # 1 Polarization: -6.97 SS G_CDS: 1.17 Total: -5.80 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 1.77 Total: -33.06 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.15 Total: -56.94 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.73 Total: -15.21 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.77 Total: -3.77 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.65 kcal Total: -75.60 6.47 -69.14 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306949036.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.237 kcal (2) G-P(sol) polarization free energy of solvation -75.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds