Wall clock time and date at job start Mon Mar 30 2020 02:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99734 * 2 1 4 4 H 1.48503 * 109.47046 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47089 * 299.99838 * 3 2 1 6 6 H 1.48496 * 109.47470 * 60.00190 * 3 2 1 7 7 C 1.37872 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.46924 * 179.97438 * 9 7 2 11 11 C 1.38485 * 120.01122 * 88.50341 * 10 9 7 12 12 F 1.35098 * 120.02463 * 359.95795 * 11 10 9 13 13 C 1.38433 * 119.94750 * 179.97438 * 11 10 9 14 14 C 1.38225 * 119.97536 * 359.97438 * 13 11 10 15 15 C 1.38219 * 120.02325 * 0.02562 * 14 13 11 16 16 C 1.38175 * 120.01321 * 268.48011 * 10 9 7 17 17 N 1.48003 * 119.99092 * 0.02562 * 16 10 9 18 18 O 1.21793 * 120.00379 * 217.31144 * 17 16 10 19 19 O 1.21801 * 119.99598 * 37.31091 * 17 16 10 20 20 H 0.97006 * 119.99938 * 359.97438 * 1 2 3 21 21 H 1.09009 * 109.47128 * 60.00431 * 9 7 2 22 22 H 1.08994 * 109.47427 * 300.00149 * 9 7 2 23 23 H 1.07997 * 120.01190 * 180.02562 * 13 11 10 24 24 H 1.07998 * 119.98563 * 179.97438 * 14 13 11 25 25 H 1.08005 * 119.96847 * 179.72022 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0018 11 6 2.7053 -4.1511 1.1964 12 9 2.2915 -3.6184 2.3669 13 6 3.6044 -5.2037 1.1937 14 6 4.0269 -5.7481 -0.0046 15 6 3.5522 -5.2415 -1.1998 16 6 2.6545 -4.1899 -1.1984 17 7 2.1472 -3.6487 -2.4792 18 8 1.9158 -4.4005 -3.4090 19 8 1.9612 -2.4514 -2.6032 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 3.9751 -5.5999 2.1275 24 1 4.7287 -6.5689 -0.0069 25 1 3.8863 -5.6646 -2.1357 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307022506.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:43 Heat of formation + Delta-G solvation = -25.131655 kcal Electronic energy + Delta-G solvation = -15252.159983 eV Core-core repulsion = 12341.685970 eV Total energy + Delta-G solvation = -2910.474013 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.57403 -41.53157 -38.83844 -35.84805 -33.73741 -31.84208 -30.99025 -27.70967 -25.87318 -23.65742 -22.13385 -21.15001 -18.75500 -17.99897 -17.17124 -16.46868 -16.14581 -15.79227 -15.72816 -15.20771 -14.52299 -13.44316 -12.91947 -12.68727 -12.37749 -12.14994 -11.59739 -11.51528 -10.85176 -10.82940 -10.69951 -10.39256 -10.13760 -9.84580 -9.68298 -9.15540 -8.44841 -8.44087 -6.06831 -4.10370 0.44431 1.16892 1.67540 2.01885 3.32596 3.38877 3.42005 3.47466 4.32404 4.44455 4.66539 4.83120 4.90324 5.13798 5.31650 5.52595 5.87450 5.90788 6.03820 6.18020 6.67822 7.01762 7.25007 7.29702 7.82754 8.11328 8.34699 8.87086 9.52703 11.04595 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.025553 B = 0.011515 C = 0.008970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.487210 B = 2431.041776 C = 3120.825345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.499 4.499 8 H 0.057 0.943 9 C 0.040 3.960 10 C -0.015 4.015 11 C 0.101 3.899 12 F -0.118 7.118 13 C -0.115 4.115 14 C -0.116 4.116 15 C -0.077 4.077 16 C -0.021 4.021 17 N 0.019 4.981 18 O -0.206 6.206 19 O -0.077 6.077 20 H 0.264 0.736 21 H 0.044 0.956 22 H 0.042 0.958 23 H 0.145 0.855 24 H 0.146 0.854 25 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.217 -10.419 1.375 12.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.135 4.135 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.537 4.537 8 H 0.075 0.925 9 C 0.004 3.996 10 C -0.017 4.017 11 C 0.081 3.919 12 F -0.097 7.097 13 C -0.134 4.134 14 C -0.134 4.134 15 C -0.096 4.096 16 C -0.103 4.103 17 N 0.543 4.457 18 O -0.408 6.408 19 O -0.312 6.312 20 H 0.073 0.927 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.163 0.837 24 H 0.164 0.836 25 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.289 -10.699 1.990 13.098 hybrid contribution 0.229 1.096 -0.118 1.126 sum 7.517 -9.603 1.873 12.338 Atomic orbital electron populations 1.69942 1.06084 1.26988 1.49803 1.24883 0.94867 0.99189 0.94569 0.86383 0.79949 0.83138 0.77634 1.19737 1.20581 1.21034 1.20642 0.92547 0.88538 1.51970 0.92499 1.18643 0.92152 0.88813 1.00016 1.20688 0.96534 0.95445 0.89012 1.17202 0.98140 0.95196 0.81412 1.91551 1.88690 1.85258 1.44165 1.21444 0.96485 0.95300 1.00199 1.20732 1.01396 1.01117 0.90192 1.20863 0.95083 0.93278 1.00397 1.20615 1.04846 1.00732 0.84111 1.43474 0.99071 1.01254 1.01943 1.94453 1.56645 1.57143 1.32523 1.94751 1.51539 0.97146 1.87764 0.92678 0.93772 0.93954 0.83734 0.83610 0.83864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.60 15 2 C 0.07 1.90 5.46 -17.82 -0.10 1.81 15 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 15 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 7 C -0.50 -13.88 8.08 -34.44 -0.28 -14.16 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 15 9 C 0.04 1.04 4.16 -29.03 -0.12 0.92 15 10 C -0.01 -0.31 5.07 -104.55 -0.53 -0.84 15 11 C 0.10 1.83 7.24 -39.42 -0.29 1.54 15 12 F -0.12 -2.30 16.51 2.25 0.04 -2.26 15 13 C -0.12 -1.53 10.03 -39.51 -0.40 -1.93 15 14 C -0.12 -1.37 10.04 -39.59 -0.40 -1.77 15 15 C -0.08 -1.13 9.66 -39.58 -0.38 -1.51 15 16 C -0.02 -0.40 6.48 -79.97 -0.52 -0.92 15 17 N 0.02 0.41 4.11 33.95 0.14 0.55 15 18 O -0.21 -4.29 18.94 -29.46 -0.56 -4.84 15 19 O -0.08 -1.90 15.80 -29.46 -0.47 -2.36 15 20 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 21 H 0.04 1.23 6.42 -51.92 -0.33 0.90 15 22 H 0.04 1.15 7.69 -51.93 -0.40 0.75 15 23 H 0.14 1.42 8.06 -52.49 -0.42 0.99 15 24 H 0.15 1.12 8.06 -52.49 -0.42 0.69 15 25 H 0.14 1.78 8.01 -52.48 -0.42 1.36 15 LS Contribution 240.01 15.07 3.62 3.62 Total: -1.00 -30.82 240.01 -6.06 -36.88 By element: Atomic # 1 Polarization: -4.34 SS G_CDS: -1.54 Total: -5.88 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -3.01 Total: -16.86 kcal Atomic # 7 Polarization: -25.92 SS G_CDS: 0.88 Total: -25.05 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -1.02 Total: -7.21 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.82 -6.06 -36.88 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307022506.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.745 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds