Wall clock time and date at job start Mon Mar 30 2020 02:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99734 * 2 1 4 4 H 1.48503 * 109.47046 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47089 * 299.99838 * 3 2 1 6 6 H 1.48496 * 109.47470 * 60.00190 * 3 2 1 7 7 C 1.37872 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.46924 * 179.97438 * 9 7 2 11 11 C 1.38485 * 120.01122 * 88.50341 * 10 9 7 12 12 F 1.35098 * 120.02463 * 359.95795 * 11 10 9 13 13 C 1.38433 * 119.94750 * 179.97438 * 11 10 9 14 14 C 1.38225 * 119.97536 * 359.97438 * 13 11 10 15 15 C 1.38219 * 120.02325 * 0.02562 * 14 13 11 16 16 C 1.38175 * 120.01321 * 268.48011 * 10 9 7 17 17 N 1.48003 * 119.99092 * 0.02562 * 16 10 9 18 18 O 1.21793 * 120.00379 * 217.31144 * 17 16 10 19 19 O 1.21801 * 119.99598 * 37.31091 * 17 16 10 20 20 H 0.97006 * 119.99938 * 359.97438 * 1 2 3 21 21 H 1.09009 * 109.47128 * 60.00431 * 9 7 2 22 22 H 1.08994 * 109.47427 * 300.00149 * 9 7 2 23 23 H 1.07997 * 120.01190 * 180.02562 * 13 11 10 24 24 H 1.07998 * 119.98563 * 179.97438 * 14 13 11 25 25 H 1.08005 * 119.96847 * 179.72022 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0018 11 6 2.7053 -4.1511 1.1964 12 9 2.2915 -3.6184 2.3669 13 6 3.6044 -5.2037 1.1937 14 6 4.0269 -5.7481 -0.0046 15 6 3.5522 -5.2415 -1.1998 16 6 2.6545 -4.1899 -1.1984 17 7 2.1472 -3.6487 -2.4792 18 8 1.9158 -4.4005 -3.4090 19 8 1.9612 -2.4514 -2.6032 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 3.9751 -5.5999 2.1275 24 1 4.7287 -6.5689 -0.0069 25 1 3.8863 -5.6646 -2.1357 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307022506.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:43 Heat of formation + Delta-G solvation = -44.186225 kcal Electronic energy + Delta-G solvation = -15252.986251 eV Core-core repulsion = 12341.685970 eV Total energy + Delta-G solvation = -2911.300281 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.00028 -43.16789 -40.18361 -37.53789 -35.62724 -33.54071 -32.40507 -29.46587 -27.47410 -25.49642 -23.58008 -22.70201 -20.25979 -19.60432 -18.88357 -18.48560 -17.52156 -17.23097 -17.09846 -16.68991 -16.36131 -14.71927 -14.55669 -14.43236 -13.89578 -13.67566 -13.18531 -13.16355 -12.73354 -12.64675 -12.50224 -12.12586 -12.00129 -11.69134 -11.62296 -10.63169 -10.47620 -9.88563 -8.24172 -6.34690 -1.03284 -0.11596 0.17546 0.50790 1.36613 1.40003 1.51024 2.19203 2.40757 3.03480 3.09680 3.50177 3.57296 3.73613 3.95595 4.18920 4.59599 4.77308 4.91064 4.91675 5.06717 5.23954 5.28094 5.58303 5.62309 5.99569 6.60899 6.70027 7.31961 8.88359 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.025553 B = 0.011515 C = 0.008970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.487210 B = 2431.041776 C = 3120.825345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.505 4.505 8 H 0.051 0.949 9 C 0.053 3.947 10 C -0.058 4.058 11 C 0.076 3.924 12 F -0.136 7.136 13 C -0.084 4.084 14 C -0.079 4.079 15 C -0.065 4.065 16 C -0.042 4.042 17 N 0.023 4.977 18 O -0.153 6.153 19 O -0.181 6.181 20 H 0.266 0.734 21 H 0.009 0.991 22 H 0.010 0.990 23 H 0.194 0.806 24 H 0.213 0.787 25 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.378 -13.301 1.888 16.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.189 4.189 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.069 0.931 9 C 0.016 3.984 10 C -0.060 4.060 11 C 0.056 3.944 12 F -0.115 7.115 13 C -0.102 4.102 14 C -0.097 4.097 15 C -0.084 4.084 16 C -0.125 4.125 17 N 0.541 4.459 18 O -0.374 6.374 19 O -0.391 6.391 20 H 0.075 0.925 21 H 0.027 0.973 22 H 0.029 0.971 23 H 0.211 0.789 24 H 0.229 0.771 25 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 10.456 -13.379 2.571 17.173 hybrid contribution -0.678 1.613 -0.320 1.779 sum 9.777 -11.766 2.250 15.463 Atomic orbital electron populations 1.70070 1.07748 1.27945 1.51254 1.25836 0.95748 1.03071 0.94263 0.85365 0.78893 0.78639 0.77957 1.18827 1.20259 1.19809 1.20900 0.92357 0.90067 1.50930 0.93051 1.18161 0.92714 0.90934 0.96637 1.20337 0.98148 0.95951 0.91581 1.17605 0.99900 0.97132 0.79712 1.91503 1.89240 1.85944 1.44766 1.22033 0.92999 0.92008 1.03171 1.21543 0.99693 1.00630 0.87798 1.21459 0.92735 0.90828 1.03377 1.20887 1.07060 1.02729 0.81790 1.43911 0.98241 1.00872 1.02885 1.94366 1.53241 1.56487 1.33314 1.94780 1.56766 0.98501 1.89041 0.92528 0.97299 0.97139 0.78923 0.77058 0.80653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.45 13.29 21.44 0.28 -58.17 15 2 C 0.01 0.54 5.46 84.65 0.46 1.00 15 3 Si 0.97 46.35 29.54 68.60 2.03 48.38 15 4 H -0.26 -12.14 7.11 99.48 0.71 -11.43 15 5 H -0.28 -13.03 7.11 99.48 0.71 -12.33 15 6 H -0.27 -12.46 7.11 99.48 0.71 -11.76 15 7 C -0.50 -29.83 8.08 25.60 0.21 -29.63 15 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 15 9 C 0.05 2.93 4.16 29.10 0.12 3.05 15 10 C -0.06 -2.53 5.07 -19.82 -0.10 -2.63 15 11 C 0.08 2.68 7.24 22.38 0.16 2.85 15 12 F -0.14 -5.35 16.51 44.97 0.74 -4.61 15 13 C -0.08 -1.75 10.03 22.31 0.22 -1.53 15 14 C -0.08 -1.28 10.04 22.26 0.22 -1.05 15 15 C -0.06 -1.59 9.66 22.27 0.22 -1.38 15 16 C -0.04 -1.62 6.48 36.37 0.24 -1.38 15 17 N 0.02 1.01 4.11 -46.49 -0.19 0.82 15 18 O -0.15 -6.24 18.94 18.90 0.36 -5.88 15 19 O -0.18 -9.60 15.80 18.89 0.30 -9.30 15 20 H 0.27 15.60 8.31 -92.70 -0.77 14.83 15 21 H 0.01 0.55 6.42 -2.38 -0.02 0.53 15 22 H 0.01 0.62 7.69 -2.39 -0.02 0.60 15 23 H 0.19 2.29 8.06 -2.91 -0.02 2.26 15 24 H 0.21 0.94 8.06 -2.91 -0.02 0.92 15 25 H 0.18 3.23 8.01 -2.91 -0.02 3.21 15 Total: -1.00 -76.14 240.01 6.49 -69.65 By element: Atomic # 1 Polarization: -11.42 SS G_CDS: 1.22 Total: -10.19 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 1.75 Total: -30.70 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.09 Total: -57.35 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.66 Total: -15.18 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.74 Total: -4.61 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -76.14 6.49 -69.65 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307022506.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.464 kcal (2) G-P(sol) polarization free energy of solvation -76.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds