Wall clock time and date at job start Mon Mar 30 2020 03:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99762 * 2 1 4 4 H 1.48499 * 109.47035 * 239.99594 * 3 2 1 5 5 H 1.48500 * 109.47565 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47496 * 119.99573 * 3 2 1 7 7 C 1.37875 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00225 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47258 * 179.97438 * 9 7 2 11 11 C 1.38312 * 119.92719 * 265.02757 * 10 9 7 12 12 C 1.38078 * 120.07492 * 179.97438 * 11 10 9 13 13 C 1.38926 * 119.92641 * 359.97438 * 12 11 10 14 14 N 1.39676 * 120.07694 * 180.02562 * 13 12 11 15 15 C 1.38889 * 119.85270 * 359.70605 * 13 12 11 16 16 C 1.38134 * 119.92215 * 0.56842 * 15 13 12 17 17 C 1.50698 * 119.96086 * 179.72774 * 16 15 13 18 18 Cl 1.80299 * 109.47172 * 269.72417 * 17 16 15 19 19 H 0.96998 * 120.00462 * 0.02562 * 1 2 3 20 20 H 1.09005 * 109.46986 * 59.99826 * 9 7 2 21 21 H 1.09004 * 109.47521 * 299.99600 * 9 7 2 22 22 H 1.08005 * 119.95959 * 0.02562 * 11 10 9 23 23 H 1.08004 * 120.03387 * 180.02562 * 12 11 10 24 24 H 0.97001 * 119.99702 * 0.02562 * 14 13 12 25 25 H 0.96998 * 120.00716 * 179.97438 * 14 13 12 26 26 H 1.07998 * 120.04103 * 180.29884 * 15 13 12 27 27 H 1.09001 * 109.46665 * 149.72773 * 17 16 15 28 28 H 1.08996 * 109.47063 * 29.72788 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2303 -3.6445 0.0005 11 6 2.5997 -4.2366 -1.1936 12 6 3.4972 -5.2859 -1.1972 13 6 4.0296 -5.7467 0.0004 14 7 4.9380 -6.8076 0.0004 15 6 3.6616 -5.1456 1.1972 16 6 2.7590 -4.1000 1.1942 17 6 2.3544 -3.4512 2.4928 18 17 0.9064 -4.2933 3.1598 19 1 -0.4851 0.8400 -0.0004 20 1 0.6247 -2.5570 -0.8897 21 1 0.6241 -2.5568 0.8903 22 1 2.1864 -3.8770 -2.1244 23 1 3.7855 -5.7474 -2.1302 24 1 5.1981 -7.2233 -0.8366 25 1 5.3094 -7.1283 0.8371 26 1 4.0773 -5.4982 2.1295 27 1 2.1155 -2.4025 2.3160 28 1 3.1761 -3.5216 3.2055 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307027686.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:01 Heat of formation + Delta-G solvation = -5.107975 kcal Electronic energy + Delta-G solvation = -13036.705290 eV Core-core repulsion = 10691.269039 eV Total energy + Delta-G solvation = -2345.436251 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.02339 -35.52590 -34.68991 -32.76519 -31.43978 -29.89482 -26.68929 -25.70016 -22.86641 -21.45061 -19.83459 -16.59531 -16.32054 -16.18301 -14.90765 -14.33380 -14.18891 -13.78700 -13.08540 -12.79697 -12.46686 -12.42269 -12.14880 -11.42063 -11.21420 -10.83034 -10.57254 -10.43247 -10.03059 -9.77942 -9.72938 -9.39646 -9.16248 -8.38995 -8.22299 -6.86297 -5.99864 -4.05665 1.77578 2.29285 3.15452 3.32321 3.37423 3.39905 4.18319 4.41252 4.63004 5.23450 5.32004 5.42966 5.61128 5.77218 6.03543 6.19905 6.26938 6.50988 6.60422 6.78483 7.20352 7.24010 7.42962 7.64589 7.91491 7.93326 7.95792 8.04493 8.36282 9.00609 9.58180 11.08059 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.024781 B = 0.009321 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.604169 B = 3003.229289 C = 3667.625596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.064 4.064 11 C -0.083 4.083 12 C -0.187 4.187 13 C 0.180 3.820 14 N -0.889 5.889 15 C -0.177 4.177 16 C -0.067 4.067 17 C 0.015 3.985 18 Cl -0.196 7.196 19 H 0.262 0.738 20 H 0.025 0.975 21 H 0.037 0.963 22 H 0.119 0.881 23 H 0.110 0.890 24 H 0.391 0.609 25 H 0.391 0.609 26 H 0.110 0.890 27 H 0.126 0.874 28 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.204 -9.993 1.969 12.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.011 3.989 10 C -0.066 4.066 11 C -0.101 4.101 12 C -0.209 4.209 13 C 0.079 3.921 14 N -0.430 5.430 15 C -0.200 4.200 16 C -0.068 4.068 17 C -0.047 4.047 18 Cl -0.170 7.170 19 H 0.072 0.928 20 H 0.043 0.957 21 H 0.055 0.945 22 H 0.137 0.863 23 H 0.128 0.872 24 H 0.219 0.781 25 H 0.218 0.782 26 H 0.129 0.871 27 H 0.144 0.856 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.882 -9.869 2.029 12.202 hybrid contribution 0.746 0.584 -0.062 0.949 sum 7.628 -9.285 1.967 12.177 Atomic orbital electron populations 1.69950 1.05972 1.26853 1.50072 1.24997 0.94808 0.99060 0.95240 0.86673 0.79594 0.83169 0.78691 1.20250 1.21296 1.20193 1.21041 0.92914 0.89985 1.51321 0.92631 1.18343 0.92571 0.89278 0.98719 1.20361 0.98183 0.96957 0.91113 1.20846 0.96526 0.94644 0.98134 1.20537 1.03222 1.01541 0.95631 1.17531 0.91461 0.89315 0.93785 1.42273 1.51531 1.38708 1.10488 1.20295 1.03715 1.00131 0.95870 1.19266 0.97273 0.96156 0.94078 1.23294 0.87788 0.99986 0.93593 1.98685 1.48477 1.82287 1.87514 0.92801 0.95665 0.94516 0.86268 0.87196 0.78139 0.78167 0.87147 0.85630 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 13.29 55.43 0.74 -25.19 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 15 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 15 7 C -0.51 -13.94 8.31 -34.44 -0.29 -14.23 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.05 1.20 4.42 -29.04 -0.13 1.08 15 10 C -0.06 -1.38 5.07 -104.59 -0.53 -1.91 15 11 C -0.08 -1.61 9.67 -39.61 -0.38 -1.99 15 12 C -0.19 -3.11 9.90 -39.39 -0.39 -3.50 15 13 C 0.18 2.84 6.75 -83.79 -0.57 2.27 15 14 N -0.89 -10.23 9.09 32.41 0.29 -9.94 15 15 C -0.18 -2.98 9.55 -39.38 -0.38 -3.35 15 16 C -0.07 -1.29 5.26 -104.65 -0.55 -1.84 15 17 C 0.02 0.28 6.02 36.00 0.22 0.50 15 18 Cl -0.20 -3.59 28.89 -51.86 -1.50 -5.09 15 19 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 20 H 0.03 0.68 8.05 -51.93 -0.42 0.26 15 21 H 0.04 0.97 6.76 -51.93 -0.35 0.62 15 22 H 0.12 2.24 8.06 -52.48 -0.42 1.81 15 23 H 0.11 1.54 8.06 -52.48 -0.42 1.12 15 24 H 0.39 3.71 8.84 -40.82 -0.36 3.34 15 25 H 0.39 3.75 8.84 -40.82 -0.36 3.39 15 26 H 0.11 1.60 8.06 -52.49 -0.42 1.18 15 27 H 0.13 2.62 6.14 -51.93 -0.32 2.30 15 28 H 0.08 1.30 8.08 -51.93 -0.42 0.89 15 LS Contribution 259.46 15.07 3.91 3.91 Total: -1.00 -29.45 259.46 -7.71 -37.16 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -3.04 Total: 4.38 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -3.09 Total: -21.39 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 1.03 Total: -35.12 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -3.59 SS G_CDS: -1.50 Total: -5.09 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.45 -7.71 -37.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307027686.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.049 kcal (2) G-P(sol) polarization free energy of solvation -29.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds