Wall clock time and date at job start Mon Mar 30 2020 02:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99864 * 2 1 4 4 H 1.48500 * 109.46631 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47422 * 300.00323 * 3 2 1 6 6 H 1.48500 * 109.46889 * 60.00520 * 3 2 1 7 7 C 1.37870 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00457 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00029 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.86727 * 59.55304 * 9 7 2 11 11 C 1.54096 * 109.87921 * 180.71526 * 9 7 2 12 12 C 1.54807 * 104.18767 * 121.45470 * 11 9 7 13 13 C 1.54996 * 102.09320 * 20.88151 * 12 11 9 14 14 H 1.08998 * 110.62160 * 81.47543 * 13 12 11 15 15 C 1.50703 * 110.61943 * 204.47755 * 13 12 11 16 16 N 1.29029 * 124.91376 * 70.21602 * 15 13 12 17 17 C 1.31787 * 117.12070 * 179.81312 * 16 15 13 18 18 C 1.33642 * 114.49831 * 0.47836 * 17 16 15 19 19 S 1.70969 * 124.91621 * 250.52222 * 15 13 12 20 20 O 1.43741 * 109.87607 * 298.54834 * 9 7 2 21 21 H 0.97002 * 119.99275 * 359.97438 * 1 2 3 22 22 H 1.09003 * 110.49000 * 240.13096 * 11 9 7 23 23 H 1.08995 * 110.49060 * 2.77806 * 11 9 7 24 24 H 1.09000 * 110.90952 * 262.68420 * 12 11 9 25 25 H 1.09004 * 110.91096 * 139.07880 * 12 11 9 26 26 H 1.08000 * 122.74894 * 180.22682 * 17 16 15 27 27 H 1.08007 * 126.03303 * 179.79145 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6156 -2.5600 -0.8840 11 6 2.2439 -3.6774 0.0169 12 6 1.8762 -4.4646 1.2982 13 6 0.4235 -3.9935 1.5630 14 1 -0.2791 -4.5469 0.9399 15 6 0.0743 -4.1440 3.0212 16 7 0.5615 -3.4248 3.9753 17 6 0.1449 -3.6865 5.1979 18 6 -0.7356 -4.6885 5.2807 19 16 -1.0192 -5.2971 3.6517 20 8 0.4477 -2.5996 1.1872 21 1 -0.4849 0.8401 0.0004 22 1 2.1102 -4.3022 -0.8662 23 1 3.2691 -3.3117 0.0749 24 1 2.5310 -4.1896 2.1251 25 1 1.9099 -5.5391 1.1179 26 1 0.4899 -3.1389 6.0625 27 1 -1.1930 -5.0591 6.1862 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307062149.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:10 Heat of formation + Delta-G solvation = 1.849469 kcal Electronic energy + Delta-G solvation = -13293.513472 eV Core-core repulsion = 10950.422624 eV Total energy + Delta-G solvation = -2343.090847 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.42510 -37.83196 -32.69487 -31.02676 -30.65225 -28.16461 -25.61556 -23.59910 -21.68102 -20.04335 -19.22322 -17.85846 -16.64075 -15.43944 -15.08756 -14.46338 -14.19046 -13.96734 -13.75697 -12.98212 -12.61694 -12.26829 -11.58736 -11.28833 -10.98762 -10.89098 -10.57496 -10.38084 -10.07211 -9.87388 -9.27769 -9.11674 -9.07189 -8.60357 -8.52672 -8.01415 -5.97282 -4.09109 0.99366 1.61748 2.00845 3.20687 3.34011 3.41688 3.45247 4.46617 4.52094 5.01125 5.32853 5.41706 5.48483 5.57176 5.67624 5.74071 6.07362 6.17185 6.30039 6.50320 6.62834 6.76230 6.82324 7.53400 7.92087 8.16805 8.24442 8.52464 9.02068 9.61100 11.10487 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.037700 B = 0.008186 C = 0.007438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.532404 B = 3419.860325 C = 3763.799203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.077 3.923 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.064 0.936 9 C 0.201 3.799 10 H 0.030 0.970 11 C -0.144 4.144 12 C -0.135 4.135 13 C 0.134 3.866 14 H 0.071 0.929 15 C 0.088 3.912 16 N -0.451 5.451 17 C 0.044 3.956 18 C -0.275 4.275 19 S 0.092 5.908 20 O -0.327 6.327 21 H 0.260 0.740 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.172 0.828 27 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.081 -10.884 6.537 12.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.129 4.129 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.566 4.566 8 H 0.082 0.918 9 C 0.145 3.855 10 H 0.048 0.952 11 C -0.182 4.182 12 C -0.174 4.174 13 C 0.072 3.928 14 H 0.089 0.911 15 C -0.191 4.191 16 N -0.164 5.164 17 C -0.108 4.108 18 C -0.414 4.414 19 S 0.346 5.654 20 O -0.246 6.246 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.189 0.811 27 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.592 -10.965 6.082 12.639 hybrid contribution 0.676 1.260 0.899 1.689 sum -0.915 -9.705 6.981 11.990 Atomic orbital electron populations 1.70045 1.06073 1.26463 1.47342 1.25085 0.94772 0.99370 0.93630 0.86552 0.80249 0.83686 0.77564 1.19595 1.20948 1.20856 1.21204 0.92629 0.89930 1.52840 0.91793 1.20403 0.87415 0.92925 0.84722 0.95238 1.23055 1.02235 0.97696 0.95185 1.23068 0.95742 0.98911 0.99726 1.21434 0.96218 0.90446 0.84730 0.91105 1.27260 0.96463 0.95101 1.00309 1.66248 1.25921 1.25415 0.98854 1.21940 0.96726 0.96963 0.95188 1.26952 1.08532 1.05211 1.00680 1.83772 1.44116 1.37067 1.00407 1.89454 1.72206 1.16627 1.46335 0.93012 0.92769 0.91037 0.90647 0.91843 0.81091 0.80978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.33 12.92 55.43 0.72 -25.61 15 2 C 0.08 2.25 5.41 -17.82 -0.10 2.15 15 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 15 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.28 -7.00 7.11 56.52 0.40 -6.60 15 7 C -0.53 -15.15 8.78 -34.44 -0.30 -15.45 15 8 H 0.06 1.78 7.33 -52.49 -0.38 1.39 15 9 C 0.20 5.26 3.26 -27.31 -0.09 5.17 15 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 11 C -0.14 -2.98 6.63 -25.21 -0.17 -3.15 15 12 C -0.13 -2.54 6.57 -24.73 -0.16 -2.70 15 13 C 0.13 2.80 3.86 -26.83 -0.10 2.69 15 14 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 15 C 0.09 1.70 6.36 -13.45 -0.09 1.61 15 16 N -0.45 -9.24 10.54 -11.86 -0.12 -9.36 15 17 C 0.04 0.70 11.35 -19.18 -0.22 0.48 15 18 C -0.27 -3.70 11.37 29.12 0.33 -3.37 15 19 S 0.09 1.35 23.18 -107.50 -2.49 -1.14 15 20 O -0.33 -8.83 10.37 -35.23 -0.37 -9.19 15 21 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 22 H 0.05 0.98 8.14 -51.93 -0.42 0.55 15 23 H 0.07 1.48 7.40 -51.93 -0.38 1.10 15 24 H 0.07 1.49 8.05 -51.93 -0.42 1.07 15 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 26 H 0.17 2.22 8.06 -52.49 -0.42 1.80 15 27 H 0.17 1.68 8.06 -52.48 -0.42 1.26 15 LS Contribution 251.23 15.07 3.79 3.79 Total: -1.00 -32.85 251.23 -7.25 -40.10 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -2.86 Total: -2.95 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.89 Total: -12.57 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.59 Total: -34.97 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.37 Total: -9.19 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.49 Total: -1.14 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.85 -7.25 -40.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307062149.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.949 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds