Wall clock time and date at job start Mon Mar 30 2020 02:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36495 * 119.77330 * 2 1 4 4 C 1.41256 * 119.86419 * 179.71976 * 3 2 1 5 5 C 1.40350 * 120.27935 * 179.97438 * 4 3 2 6 6 H 1.08003 * 119.99432 * 335.83762 * 5 4 3 7 7 C 1.46537 * 120.00054 * 155.83846 * 5 4 3 8 8 N 1.29506 * 119.99908 * 344.40437 * 7 5 4 9 9 Si 1.86801 * 119.99836 * 164.40570 * 7 5 4 10 10 H 1.48503 * 109.46632 * 89.99700 * 9 7 5 11 11 H 1.48495 * 109.46929 * 209.99427 * 9 7 5 12 12 H 1.48500 * 109.47274 * 330.00171 * 9 7 5 13 13 C 1.41270 * 119.44537 * 0.02562 * 4 3 2 14 14 C 1.37684 * 119.54906 * 359.97438 * 13 4 3 15 15 F 1.35095 * 119.94018 * 179.97438 * 14 13 4 16 16 C 1.38714 * 119.77561 * 179.72573 * 2 1 3 17 17 N 1.48023 * 119.71342 * 0.27438 * 16 2 1 18 18 O 1.31700 * 119.99704 * 90.00111 * 17 16 2 19 19 O 1.31698 * 120.00309 * 270.00131 * 17 16 2 20 20 H 1.08997 * 109.46765 * 90.00143 * 1 2 3 21 21 H 1.08992 * 109.46922 * 210.00076 * 1 2 3 22 22 H 1.09005 * 109.46824 * 329.99955 * 1 2 3 23 23 H 1.07996 * 120.06600 * 359.74365 * 3 2 1 24 24 H 0.96998 * 120.00040 * 180.02562 * 8 7 5 25 25 H 1.08000 * 120.22417 * 179.97438 * 13 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.1848 0.0000 4 6 3.5974 1.1870 0.0060 5 6 4.3031 2.4002 0.0055 6 1 3.8386 3.2949 -0.3819 7 6 5.6702 2.4528 0.5306 8 7 6.1210 1.4830 1.2610 9 14 6.7625 3.9186 0.1464 10 1 6.5853 4.9560 1.1941 11 1 8.1819 3.4835 0.1156 12 1 6.3884 4.4817 -1.1759 13 6 4.2938 -0.0421 0.0114 14 6 3.5864 -1.2233 0.0113 15 9 4.2444 -2.4032 0.0159 16 6 2.1959 -1.2040 0.0058 17 7 1.4444 -2.4793 0.0057 18 8 1.1149 -3.0493 -1.1349 19 8 1.1053 -3.0439 1.1462 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6422 2.1185 -0.0042 24 1 7.0258 1.5180 1.6089 25 1 5.3737 -0.0550 0.0156 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307083663.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:13 Heat of formation + Delta-G solvation = -22.801741 kcal Electronic energy + Delta-G solvation = -14984.073444 eV Core-core repulsion = 12073.700464 eV Total energy + Delta-G solvation = -2910.372980 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.22248 -38.77276 -37.27293 -34.49860 -33.53244 -31.82289 -30.52645 -27.31739 -26.34325 -24.00104 -21.28278 -20.93886 -17.98427 -17.53456 -17.41114 -16.25968 -15.97050 -15.20368 -14.84121 -14.25523 -13.72419 -13.16663 -13.03632 -12.85813 -12.40462 -12.05041 -11.75004 -11.42332 -11.20578 -10.81999 -10.67563 -10.63648 -10.45236 -10.12007 -9.93562 -9.82360 -8.32015 -7.93209 -7.55621 -5.13224 0.64540 1.90215 2.22990 2.31342 2.65214 2.69226 2.74831 3.37939 3.76827 4.82473 4.90995 5.42462 5.65084 5.92203 6.03012 6.04893 6.16245 6.24014 6.39373 6.49971 6.88305 7.03405 7.12654 7.29955 7.41993 7.52763 7.81922 8.02547 8.18337 9.29546 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.043120 B = 0.008267 C = 0.007323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.200525 B = 3386.078153 C = 3822.449753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.014 3.986 3 C -0.224 4.224 4 C 0.128 3.872 5 C -0.408 4.408 6 H 0.101 0.899 7 C 0.066 3.934 8 N -0.728 5.728 9 Si 0.930 3.070 10 H -0.260 1.260 11 H -0.268 1.268 12 H -0.250 1.250 13 C -0.209 4.209 14 C 0.165 3.835 15 F -0.152 7.152 16 C -0.199 4.199 17 N 0.005 4.995 18 O -0.177 6.177 19 O -0.180 6.180 20 H 0.072 0.928 21 H 0.055 0.945 22 H 0.075 0.925 23 H 0.119 0.881 24 H 0.302 0.698 25 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.106 4.622 -1.092 4.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.012 3.988 3 C -0.244 4.244 4 C 0.125 3.875 5 C -0.432 4.432 6 H 0.119 0.881 7 C -0.165 4.165 8 N -0.347 5.347 9 Si 0.751 3.249 10 H -0.184 1.184 11 H -0.192 1.192 12 H -0.173 1.173 13 C -0.230 4.230 14 C 0.144 3.856 15 F -0.131 7.131 16 C -0.283 4.283 17 N 0.499 4.501 18 O -0.382 6.382 19 O -0.383 6.383 20 H 0.091 0.909 21 H 0.074 0.926 22 H 0.093 0.907 23 H 0.137 0.863 24 H 0.115 0.885 25 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.719 5.120 -0.925 5.253 hybrid contribution 0.460 -0.223 0.041 0.513 sum 1.180 4.898 -0.885 5.115 Atomic orbital electron populations 1.20867 0.91783 1.02698 1.02369 1.18444 0.94700 0.89820 0.95807 1.20574 0.93802 0.94949 1.15040 1.17459 0.90887 0.92491 0.86704 1.21155 0.95563 0.95978 1.30552 0.88111 1.27782 0.98590 0.98275 0.91815 1.69083 1.18101 1.30655 1.16826 0.85930 0.78176 0.79690 0.81097 1.18413 1.19220 1.17331 1.21276 1.00519 0.88905 1.12281 1.16992 0.85871 0.81600 1.01150 1.91422 1.81315 1.46251 1.94106 1.19267 0.88556 0.79784 1.40645 1.50420 0.96280 1.02425 1.01006 1.96164 1.59017 1.66962 1.16031 1.96172 1.58733 1.67394 1.16018 0.90901 0.92562 0.90651 0.86285 0.88526 0.83782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 9.75 36.01 0.35 -1.83 15 2 C 0.01 0.31 5.84 -105.07 -0.61 -0.31 15 3 C -0.22 -4.83 9.39 -39.06 -0.37 -5.20 15 4 C 0.13 2.98 5.62 -106.80 -0.60 2.38 15 5 C -0.41 -8.84 9.32 -35.44 -0.33 -9.17 15 6 H 0.10 1.99 7.98 -52.48 -0.42 1.57 15 7 C 0.07 1.34 5.35 -15.19 -0.08 1.25 15 8 N -0.73 -15.53 10.95 55.98 0.61 -14.92 15 9 Si 0.93 14.73 29.67 -169.99 -5.04 9.68 15 10 H -0.26 -4.06 7.11 56.52 0.40 -3.66 15 11 H -0.27 -4.18 7.11 56.52 0.40 -3.78 15 12 H -0.25 -3.94 7.11 56.52 0.40 -3.54 15 13 C -0.21 -5.08 8.75 -38.63 -0.34 -5.41 15 14 C 0.16 4.10 7.29 -39.48 -0.29 3.82 15 15 F -0.15 -3.79 17.08 2.25 0.04 -3.75 15 16 C -0.20 -4.88 6.27 -79.46 -0.50 -5.37 15 17 N 0.00 0.12 3.60 34.20 0.12 0.25 15 18 O -0.18 -4.30 19.97 -31.57 -0.63 -4.93 15 19 O -0.18 -4.41 19.89 -31.57 -0.63 -5.04 15 20 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 21 H 0.06 1.06 7.32 -51.93 -0.38 0.68 15 22 H 0.07 1.16 8.08 -51.93 -0.42 0.74 15 23 H 0.12 2.25 8.06 -52.49 -0.42 1.83 15 24 H 0.30 5.64 8.27 -40.82 -0.34 5.31 15 25 H 0.14 3.49 6.10 -52.49 -0.32 3.17 15 LS Contribution 243.99 15.07 3.68 3.68 Total: -1.00 -25.64 243.99 -6.13 -31.77 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -1.52 Total: 3.12 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -2.76 Total: -19.85 kcal Atomic # 7 Polarization: -15.41 SS G_CDS: 0.74 Total: -14.68 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -1.26 Total: -9.97 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.04 Total: -3.75 kcal Atomic # 14 Polarization: 14.73 SS G_CDS: -5.04 Total: 9.68 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -25.64 -6.13 -31.77 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307083663.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.969 kcal (2) G-P(sol) polarization free energy of solvation -25.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds