Wall clock time and date at job start Mon Mar 30 2020 02:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36495 * 119.77330 * 2 1 4 4 C 1.41256 * 119.86419 * 179.71976 * 3 2 1 5 5 C 1.40350 * 120.27935 * 179.97438 * 4 3 2 6 6 H 1.08003 * 119.99432 * 335.83762 * 5 4 3 7 7 C 1.46537 * 120.00054 * 155.83846 * 5 4 3 8 8 N 1.29506 * 119.99908 * 344.40437 * 7 5 4 9 9 Si 1.86801 * 119.99836 * 164.40570 * 7 5 4 10 10 H 1.48503 * 109.46632 * 89.99700 * 9 7 5 11 11 H 1.48495 * 109.46929 * 209.99427 * 9 7 5 12 12 H 1.48500 * 109.47274 * 330.00171 * 9 7 5 13 13 C 1.41270 * 119.44537 * 0.02562 * 4 3 2 14 14 C 1.37684 * 119.54906 * 359.97438 * 13 4 3 15 15 F 1.35095 * 119.94018 * 179.97438 * 14 13 4 16 16 C 1.38714 * 119.77561 * 179.72573 * 2 1 3 17 17 N 1.48023 * 119.71342 * 0.27438 * 16 2 1 18 18 O 1.31700 * 119.99704 * 90.00111 * 17 16 2 19 19 O 1.31698 * 120.00309 * 270.00131 * 17 16 2 20 20 H 1.08997 * 109.46765 * 90.00143 * 1 2 3 21 21 H 1.08992 * 109.46922 * 210.00076 * 1 2 3 22 22 H 1.09005 * 109.46824 * 329.99955 * 1 2 3 23 23 H 1.07996 * 120.06600 * 359.74365 * 3 2 1 24 24 H 0.96998 * 120.00040 * 180.02562 * 8 7 5 25 25 H 1.08000 * 120.22417 * 179.97438 * 13 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.1848 0.0000 4 6 3.5974 1.1870 0.0060 5 6 4.3031 2.4002 0.0055 6 1 3.8386 3.2949 -0.3819 7 6 5.6702 2.4528 0.5306 8 7 6.1210 1.4830 1.2610 9 14 6.7625 3.9186 0.1464 10 1 6.5853 4.9560 1.1941 11 1 8.1819 3.4835 0.1156 12 1 6.3884 4.4817 -1.1759 13 6 4.2938 -0.0421 0.0114 14 6 3.5864 -1.2233 0.0113 15 9 4.2444 -2.4032 0.0159 16 6 2.1959 -1.2040 0.0058 17 7 1.4444 -2.4793 0.0057 18 8 1.1149 -3.0493 -1.1349 19 8 1.1053 -3.0439 1.1462 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6422 2.1185 -0.0042 24 1 7.0258 1.5180 1.6089 25 1 5.3737 -0.0550 0.0156 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307083663.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:13 Heat of formation + Delta-G solvation = -35.149486 kcal Electronic energy + Delta-G solvation = -14984.608883 eV Core-core repulsion = 12073.700464 eV Total energy + Delta-G solvation = -2910.908418 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.14283 -40.56314 -39.08777 -36.14429 -35.45804 -33.47218 -32.28385 -29.11752 -27.91859 -25.79261 -23.05985 -22.66241 -19.67297 -19.38940 -19.34015 -17.97515 -17.77232 -16.82022 -16.72583 -16.15167 -15.28171 -14.71652 -14.64569 -14.47840 -14.01579 -13.59597 -13.19777 -12.86590 -12.78132 -12.61906 -12.44679 -12.19116 -12.12514 -11.87800 -11.85395 -11.34380 -10.08592 -9.69607 -9.13760 -6.85464 -1.25919 0.15814 0.37536 0.57522 1.35647 1.40995 1.56472 2.05204 2.20938 3.09965 3.14631 3.82046 4.10683 4.25171 4.40607 4.54395 4.56007 4.62554 4.75266 4.88335 5.18182 5.26084 5.41639 5.59855 5.62143 5.70783 6.11084 6.30472 6.46016 7.75512 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.043120 B = 0.008267 C = 0.007323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.200525 B = 3386.078153 C = 3822.449753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.008 3.992 3 C -0.223 4.223 4 C 0.097 3.903 5 C -0.405 4.405 6 H 0.123 0.877 7 C 0.029 3.971 8 N -0.756 5.756 9 Si 1.006 2.994 10 H -0.251 1.251 11 H -0.265 1.265 12 H -0.244 1.244 13 C -0.222 4.222 14 C 0.143 3.857 15 F -0.162 7.162 16 C -0.237 4.237 17 N 0.008 4.992 18 O -0.176 6.176 19 O -0.195 6.195 20 H 0.088 0.912 21 H 0.042 0.958 22 H 0.106 0.894 23 H 0.150 0.850 24 H 0.314 0.686 25 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.367 7.255 -1.359 7.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.006 3.994 3 C -0.242 4.242 4 C 0.094 3.906 5 C -0.428 4.428 6 H 0.141 0.859 7 C -0.199 4.199 8 N -0.374 5.374 9 Si 0.823 3.177 10 H -0.175 1.175 11 H -0.189 1.189 12 H -0.167 1.167 13 C -0.242 4.242 14 C 0.122 3.878 15 F -0.141 7.141 16 C -0.319 4.319 17 N 0.501 4.499 18 O -0.383 6.383 19 O -0.396 6.396 20 H 0.107 0.893 21 H 0.061 0.939 22 H 0.125 0.875 23 H 0.167 0.833 24 H 0.128 0.872 25 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.959 7.727 -1.158 7.872 hybrid contribution 0.502 -0.935 0.144 1.071 sum 1.461 6.792 -1.014 7.021 Atomic orbital electron populations 1.20922 0.89110 1.03537 1.03629 1.18880 0.96691 0.88940 0.94888 1.20876 0.93268 0.95948 1.14122 1.17827 0.92098 0.92628 0.88090 1.21742 0.96508 0.96103 1.28430 0.85909 1.28799 0.99238 1.00962 0.90932 1.69105 1.19212 1.32278 1.16838 0.84815 0.75976 0.75795 0.81101 1.17498 1.18891 1.16717 1.21289 1.00137 0.89441 1.13376 1.17270 0.86488 0.81568 1.02476 1.91379 1.81561 1.46769 1.94341 1.19567 0.88514 0.80262 1.43596 1.50511 0.96036 1.02526 1.00797 1.96136 1.58939 1.67028 1.16156 1.96155 1.59498 1.67755 1.16194 0.89311 0.93925 0.87529 0.83287 0.87228 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 9.75 71.24 0.69 -3.27 15 2 C 0.01 0.33 5.84 -20.16 -0.12 0.22 15 3 C -0.22 -9.26 9.39 22.60 0.21 -9.04 15 4 C 0.10 4.44 5.62 -21.28 -0.12 4.32 15 5 C -0.41 -16.69 9.32 24.95 0.23 -16.45 15 6 H 0.12 4.43 7.98 -2.91 -0.02 4.40 15 7 C 0.03 1.12 5.35 87.20 0.47 1.59 15 8 N -0.76 -31.52 10.95 23.21 0.25 -31.27 15 9 Si 1.01 27.58 29.67 68.60 2.04 29.62 15 10 H -0.25 -6.57 7.11 99.48 0.71 -5.86 15 11 H -0.26 -7.10 7.11 99.48 0.71 -6.40 15 12 H -0.24 -6.47 7.11 99.48 0.71 -5.77 15 13 C -0.22 -10.95 8.75 22.88 0.20 -10.75 15 14 C 0.14 7.31 7.29 22.34 0.16 7.48 15 15 F -0.16 -8.35 17.08 44.97 0.77 -7.58 15 16 C -0.24 -11.72 6.27 36.69 0.23 -11.49 15 17 N 0.01 0.42 3.60 -45.71 -0.16 0.26 15 18 O -0.18 -8.60 19.97 3.52 0.07 -8.53 15 19 O -0.20 -9.78 19.89 3.52 0.07 -9.71 15 20 H 0.09 2.76 8.14 -2.39 -0.02 2.74 15 21 H 0.04 1.57 7.32 -2.39 -0.02 1.55 15 22 H 0.11 2.94 8.08 -2.38 -0.02 2.92 15 23 H 0.15 5.14 8.06 -2.91 -0.02 5.12 15 24 H 0.31 11.38 8.27 -92.71 -0.77 10.62 15 25 H 0.14 6.74 6.10 -2.91 -0.02 6.72 15 Total: -1.00 -54.82 243.99 6.23 -48.59 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 1.23 Total: 16.04 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 1.96 Total: -37.41 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 0.09 Total: -31.01 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.14 Total: -18.24 kcal Atomic # 9 Polarization: -8.35 SS G_CDS: 0.77 Total: -7.58 kcal Atomic # 14 Polarization: 27.58 SS G_CDS: 2.04 Total: 29.62 kcal Total: -54.82 6.23 -48.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307083663.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.437 kcal (2) G-P(sol) polarization free energy of solvation -54.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds