Wall clock time and date at job start Mon Mar 30 2020 02:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31594 * 1 3 3 Si 1.86803 * 120.00262 * 2 1 4 4 H 1.48490 * 109.47019 * 240.00248 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00214 * 3 2 1 7 7 C 1.38767 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99604 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99931 * 0.27747 * 7 2 1 10 10 C 1.76201 * 99.99986 * 179.72349 * 9 7 2 11 11 C 1.39591 * 119.64552 * 179.72852 * 10 9 7 12 12 C 1.38260 * 119.29191 * 179.75045 * 11 10 9 13 13 C 1.38843 * 118.58440 * 0.50972 * 12 11 10 14 14 C 1.39240 * 119.23492 * 359.73014 * 13 12 11 15 15 C 1.48056 * 119.67455 * 179.97438 * 14 13 12 16 16 O 1.21436 * 120.00572 * 0.02562 * 15 14 13 17 17 O 1.34690 * 120.00010 * 180.02562 * 15 14 13 18 18 N 1.32166 * 119.63819 * 359.97438 * 10 9 7 19 19 H 0.97000 * 119.99196 * 359.97438 * 1 2 3 20 20 H 1.07997 * 120.35198 * 359.97438 * 11 10 9 21 21 H 1.07997 * 120.70364 * 180.23711 * 12 11 10 22 22 H 1.08003 * 120.38091 * 179.70876 * 13 12 11 23 23 H 0.96692 * 116.99760 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 3.1037 1.6963 -1.2125 5 1 1.2850 2.7464 0.0006 6 1 3.1038 1.6963 1.2125 7 6 2.0097 -1.2018 -0.0005 8 1 3.0897 -1.2018 -0.0010 9 16 1.1286 -2.7277 -0.0086 10 6 2.4783 -3.8603 -0.0146 11 6 2.2274 -5.2335 -0.0161 12 6 3.2919 -6.1157 -0.0260 13 6 4.5813 -5.6009 -0.0233 14 6 4.7624 -4.2203 -0.0165 15 6 6.1331 -3.6608 -0.0131 16 8 7.0928 -4.4049 -0.0166 17 8 6.3158 -2.3264 -0.0060 18 7 3.7174 -3.4005 -0.0126 19 1 -0.4849 0.8401 0.0004 20 1 1.2125 -5.6028 -0.0132 21 1 3.1239 -7.1825 -0.0312 22 1 5.4341 -6.2636 -0.0262 23 1 7.2290 -2.0084 -0.0043 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307135895.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:39 Heat of formation + Delta-G solvation = -62.446967 kcal Electronic energy + Delta-G solvation = -12575.851394 eV Core-core repulsion = 10094.139350 eV Total energy + Delta-G solvation = -2481.712044 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.025 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.19098 -38.74692 -35.85413 -32.70913 -32.06501 -30.94148 -25.78670 -24.86427 -23.18713 -21.36071 -18.37919 -17.78527 -16.99243 -16.02393 -15.46450 -15.45913 -14.93199 -14.66061 -13.36181 -13.33453 -13.02032 -12.73794 -11.78876 -11.31929 -11.26053 -11.13110 -11.00862 -10.60335 -10.12171 -9.78861 -9.38169 -8.93904 -8.92961 -8.82563 -6.82969 -6.47940 -4.18310 0.96767 1.69952 2.75037 2.96168 3.19914 3.21047 3.22623 3.30059 3.99870 4.26470 4.77044 4.97661 5.19200 5.29406 5.49695 5.59306 5.76690 5.96744 6.38427 6.51976 6.63180 6.95691 7.58259 8.01518 8.40873 8.46098 9.05405 10.59936 Molecular weight = 225.02amu Principal moments of inertia in cm(-1) A = 0.027683 B = 0.010117 C = 0.007428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.190624 B = 2767.024719 C = 3768.368857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.073 3.927 3 Si 0.931 3.069 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.111 0.889 9 S 0.108 5.892 10 C 0.100 3.900 11 C -0.153 4.153 12 C -0.068 4.068 13 C -0.162 4.162 14 C 0.103 3.897 15 C 0.548 3.452 16 O -0.522 6.522 17 O -0.487 6.487 18 N -0.436 5.436 19 H 0.274 0.726 20 H 0.136 0.864 21 H 0.136 0.864 22 H 0.136 0.864 23 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.928 -7.068 -0.035 9.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.136 4.136 3 Si 0.756 3.244 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.682 4.682 8 H 0.129 0.871 9 S 0.362 5.638 10 C -0.150 4.150 11 C -0.184 4.184 12 C -0.095 4.095 13 C -0.191 4.191 14 C -0.039 4.039 15 C 0.391 3.609 16 O -0.411 6.411 17 O -0.295 6.295 18 N -0.153 5.153 19 H 0.084 0.916 20 H 0.154 0.846 21 H 0.153 0.847 22 H 0.154 0.846 23 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 4.344 -6.302 -0.032 7.654 hybrid contribution 2.278 0.487 -0.004 2.330 sum 6.622 -5.814 -0.036 8.812 Atomic orbital electron populations 1.69955 1.06184 1.28502 1.46333 1.25165 0.95113 0.99877 0.93460 0.86002 0.79099 0.79807 0.79449 1.19486 1.20913 1.19486 1.23431 0.97645 0.89640 1.57488 0.87073 1.83545 1.01801 0.97562 1.80911 1.24377 0.97017 0.96590 0.97052 1.21909 1.00189 0.92774 1.03491 1.21264 0.91707 0.99755 0.96765 1.21605 0.98334 0.94110 1.05083 1.19933 0.90478 0.90509 1.03000 1.20780 0.88806 0.80180 0.71141 1.90836 1.42216 1.60708 1.47350 1.84814 1.36415 1.23688 1.84616 1.68257 0.97868 1.37117 1.12086 0.91631 0.84584 0.84657 0.84628 0.73756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.49 13.22 55.49 0.73 -23.75 14 2 C 0.07 1.98 5.49 -17.46 -0.10 1.88 14 3 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 14 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 14 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 14 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 14 7 C -0.53 -14.76 9.25 30.93 0.29 -14.48 14 8 H 0.11 3.14 6.53 -52.49 -0.34 2.79 14 9 S 0.11 2.67 21.64 -107.50 -2.33 0.34 14 10 C 0.10 2.17 6.96 -16.90 -0.12 2.06 14 11 C -0.15 -2.65 9.85 -39.07 -0.38 -3.04 14 12 C -0.07 -1.00 10.16 -39.35 -0.40 -1.40 14 13 C -0.16 -2.65 9.63 -38.99 -0.38 -3.03 14 14 C 0.10 2.01 6.74 -83.04 -0.56 1.45 14 15 C 0.55 9.88 8.32 34.76 0.29 10.17 14 16 O -0.52 -9.54 17.10 -19.22 -0.33 -9.87 14 17 O -0.49 -8.01 13.24 -40.47 -0.54 -8.55 14 18 N -0.44 -9.84 8.19 -8.65 -0.07 -9.91 14 19 H 0.27 7.16 8.31 -40.82 -0.34 6.82 14 20 H 0.14 2.00 8.06 -52.49 -0.42 1.57 14 21 H 0.14 1.44 8.06 -52.49 -0.42 1.01 14 22 H 0.14 1.94 7.63 -52.48 -0.40 1.54 14 23 H 0.41 4.16 9.11 45.56 0.42 4.57 14 LS Contribution 238.37 15.07 3.59 3.59 Total: -1.00 -31.63 238.37 -5.63 -37.25 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -0.31 Total: 1.11 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -1.36 Total: -6.38 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.66 Total: -33.66 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.86 Total: -18.41 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -2.33 Total: 0.34 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.63 -5.63 -37.25 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307135895.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.195 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds