Wall clock time and date at job start Mon Mar 30 2020 02:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31594 * 1 3 3 Si 1.86803 * 120.00262 * 2 1 4 4 H 1.48490 * 109.47019 * 240.00248 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00214 * 3 2 1 7 7 C 1.38767 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99604 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99931 * 0.27747 * 7 2 1 10 10 C 1.76201 * 99.99986 * 179.72349 * 9 7 2 11 11 C 1.39591 * 119.64552 * 179.72852 * 10 9 7 12 12 C 1.38260 * 119.29191 * 179.75045 * 11 10 9 13 13 C 1.38843 * 118.58440 * 0.50972 * 12 11 10 14 14 C 1.39240 * 119.23492 * 359.73014 * 13 12 11 15 15 C 1.48056 * 119.67455 * 179.97438 * 14 13 12 16 16 O 1.21436 * 120.00572 * 0.02562 * 15 14 13 17 17 O 1.34690 * 120.00010 * 180.02562 * 15 14 13 18 18 N 1.32166 * 119.63819 * 359.97438 * 10 9 7 19 19 H 0.97000 * 119.99196 * 359.97438 * 1 2 3 20 20 H 1.07997 * 120.35198 * 359.97438 * 11 10 9 21 21 H 1.07997 * 120.70364 * 180.23711 * 12 11 10 22 22 H 1.08003 * 120.38091 * 179.70876 * 13 12 11 23 23 H 0.96692 * 116.99760 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 3.1037 1.6963 -1.2125 5 1 1.2850 2.7464 0.0006 6 1 3.1038 1.6963 1.2125 7 6 2.0097 -1.2018 -0.0005 8 1 3.0897 -1.2018 -0.0010 9 16 1.1286 -2.7277 -0.0086 10 6 2.4783 -3.8603 -0.0146 11 6 2.2274 -5.2335 -0.0161 12 6 3.2919 -6.1157 -0.0260 13 6 4.5813 -5.6009 -0.0233 14 6 4.7624 -4.2203 -0.0165 15 6 6.1331 -3.6608 -0.0131 16 8 7.0928 -4.4049 -0.0166 17 8 6.3158 -2.3264 -0.0060 18 7 3.7174 -3.4005 -0.0126 19 1 -0.4849 0.8401 0.0004 20 1 1.2125 -5.6028 -0.0132 21 1 3.1239 -7.1825 -0.0312 22 1 5.4341 -6.2636 -0.0262 23 1 7.2290 -2.0084 -0.0043 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307135895.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:38 Heat of formation + Delta-G solvation = -85.044626 kcal Electronic energy + Delta-G solvation = -12576.831302 eV Core-core repulsion = 10094.139350 eV Total energy + Delta-G solvation = -2482.691952 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.025 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.60625 -40.19810 -37.20892 -34.70577 -33.51834 -32.41115 -27.78130 -26.31830 -24.65549 -22.78199 -20.05608 -19.26468 -18.56469 -17.53433 -16.96402 -16.85235 -16.77123 -16.24877 -14.96746 -14.85793 -14.48813 -14.12641 -13.39983 -13.05596 -12.97462 -12.70483 -12.65805 -12.12603 -11.84291 -11.46006 -10.90246 -10.84405 -10.62214 -10.36347 -8.67783 -8.47199 -6.22156 -0.44263 0.28602 1.24455 1.34900 1.40320 1.41629 1.52312 1.93050 2.16551 2.77963 2.96672 3.05738 3.60460 4.06347 4.16879 4.21636 4.40749 4.61196 5.07450 5.16617 5.37930 5.53045 5.63451 6.33272 6.69349 7.00829 7.04795 8.62000 Molecular weight = 225.02amu Principal moments of inertia in cm(-1) A = 0.027683 B = 0.010117 C = 0.007428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.190624 B = 2767.024719 C = 3768.368857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.991 3.009 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.552 4.552 8 H 0.095 0.905 9 S 0.045 5.955 10 C 0.084 3.916 11 C -0.141 4.141 12 C -0.049 4.049 13 C -0.136 4.136 14 C 0.068 3.932 15 C 0.551 3.449 16 O -0.527 6.527 17 O -0.498 6.498 18 N -0.473 5.473 19 H 0.277 0.723 20 H 0.164 0.836 21 H 0.195 0.805 22 H 0.166 0.834 23 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.277 -9.079 -0.046 11.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.814 3.186 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.700 4.700 8 H 0.113 0.887 9 S 0.295 5.705 10 C -0.167 4.167 11 C -0.170 4.170 12 C -0.075 4.075 13 C -0.163 4.163 14 C -0.072 4.072 15 C 0.394 3.606 16 O -0.417 6.417 17 O -0.309 6.309 18 N -0.190 5.190 19 H 0.086 0.914 20 H 0.181 0.819 21 H 0.212 0.788 22 H 0.183 0.817 23 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 5.778 -8.360 -0.043 10.162 hybrid contribution 2.060 0.821 -0.001 2.218 sum 7.838 -7.539 -0.045 10.876 Atomic orbital electron populations 1.70042 1.07354 1.29244 1.47740 1.25999 0.95958 1.02949 0.93177 0.85095 0.78020 0.76204 0.79311 1.19267 1.19570 1.19261 1.23490 0.97078 0.91343 1.58060 0.88680 1.83329 1.04348 0.97954 1.84891 1.24219 0.95975 0.97532 0.98936 1.22314 1.02675 0.90956 1.01015 1.21912 0.89815 1.02141 0.93668 1.22144 1.00267 0.93073 1.00815 1.20390 0.90331 0.91954 1.04534 1.20622 0.88380 0.80544 0.71027 1.90827 1.42106 1.60864 1.47930 1.84769 1.38852 1.23142 1.84186 1.68060 0.98829 1.39171 1.12933 0.91427 0.81877 0.78817 0.81667 0.70941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.38 13.22 21.64 0.29 -52.09 14 2 C 0.02 1.36 5.49 84.86 0.47 1.83 14 3 Si 0.99 44.34 29.55 68.60 2.03 46.37 14 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 14 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 14 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 14 7 C -0.55 -31.68 9.25 67.95 0.63 -31.05 14 8 H 0.10 5.60 6.53 -2.91 -0.02 5.58 14 9 S 0.05 2.31 21.64 -56.49 -1.22 1.09 14 10 C 0.08 3.64 6.96 84.97 0.59 4.23 14 11 C -0.14 -4.45 9.85 22.60 0.22 -4.22 14 12 C -0.05 -1.18 10.16 22.42 0.23 -0.95 14 13 C -0.14 -3.87 9.63 22.66 0.22 -3.65 14 14 C 0.07 2.55 6.74 41.84 0.28 2.83 14 15 C 0.55 19.06 8.32 70.43 0.59 19.64 14 16 O -0.53 -18.03 17.10 20.04 0.34 -17.69 14 17 O -0.50 -16.00 13.24 -56.00 -0.74 -16.74 14 18 N -0.47 -21.31 8.19 -181.28 -1.49 -22.79 14 19 H 0.28 14.84 8.31 -92.71 -0.77 14.07 14 20 H 0.16 4.23 8.06 -2.91 -0.02 4.20 14 21 H 0.19 2.57 8.06 -2.91 -0.02 2.54 14 22 H 0.17 3.80 7.63 -2.91 -0.02 3.78 14 23 H 0.43 8.27 9.11 -74.06 -0.67 7.60 14 Total: -1.00 -71.20 238.37 3.02 -68.18 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 0.59 Total: 5.02 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 3.22 Total: -11.34 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -1.20 Total: -74.88 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.40 Total: -34.43 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.22 Total: 1.09 kcal Total: -71.20 3.02 -68.18 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307135895.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.864 kcal (2) G-P(sol) polarization free energy of solvation -71.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds