Wall clock time and date at job start Mon Mar 30 2020 03:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38132 * 120.03519 * 264.72158 * 10 9 7 12 12 C 1.38263 * 120.07008 * 179.77257 * 11 10 9 13 13 C 1.38312 * 120.15144 * 0.50255 * 12 11 10 14 14 C 1.50696 * 119.96024 * 179.72807 * 13 12 11 15 15 Cl 1.80305 * 109.47096 * 270.02201 * 14 13 12 16 16 C 1.38080 * 120.07633 * 359.75178 * 13 12 11 17 17 C 1.38888 * 120.03839 * 84.99783 * 10 9 7 18 18 N 1.39672 * 120.07614 * 0.02562 * 17 10 9 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.07997 * 119.96452 * 0.02562 * 11 10 9 23 23 H 1.07998 * 119.92343 * 180.23936 * 12 11 10 24 24 H 1.08994 * 109.47495 * 30.02518 * 14 13 12 25 25 H 1.09004 * 109.47018 * 150.02707 * 14 13 12 26 26 H 1.07995 * 120.04196 * 180.02562 * 16 13 12 27 27 H 0.97002 * 119.99969 * 359.97438 * 18 17 10 28 28 H 0.96998 * 120.00188 * 180.02562 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.5959 -4.2417 -1.1902 12 6 3.4978 -5.2896 -1.1915 13 6 4.0290 -5.7504 -0.0005 14 6 5.0071 -6.8969 -0.0064 15 17 4.1092 -8.4536 0.1396 16 6 3.6638 -5.1616 1.1939 17 6 2.7617 -4.1050 1.1983 18 7 2.3893 -3.5077 2.4047 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 2.1799 -3.8869 -2.1216 23 1 3.7850 -5.7521 -2.1242 24 1 5.5709 -6.8887 -0.9391 25 1 5.6935 -6.7932 0.8340 26 1 4.0792 -5.5217 2.1234 27 1 1.7591 -2.7703 2.4066 28 1 2.7614 -3.8299 3.2406 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307236129.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:19 Heat of formation + Delta-G solvation = -23.605602 kcal Electronic energy + Delta-G solvation = -12862.121311 eV Core-core repulsion = 10515.882943 eV Total energy + Delta-G solvation = -2346.238368 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.41598 -36.98863 -35.74976 -35.01066 -33.35124 -30.31684 -29.48428 -26.96746 -24.33416 -23.18265 -21.28339 -18.47619 -17.78301 -17.39315 -16.70610 -15.93741 -15.35556 -15.28878 -14.67003 -14.51203 -14.11732 -14.00016 -13.50662 -13.28905 -12.98116 -12.65596 -12.40738 -11.94618 -11.58004 -11.50128 -11.26763 -11.22787 -11.12826 -10.59164 -9.41475 -8.31177 -8.04268 -6.30056 0.40702 0.85800 1.38321 1.40271 1.52461 1.73472 2.40628 3.12440 3.16607 3.25098 3.80333 4.03864 4.30506 4.44969 4.57311 4.61425 4.81542 5.06480 5.20881 5.28013 5.42024 5.60387 5.75666 5.78060 6.04060 6.14309 6.24316 6.78210 6.82389 7.20218 7.38483 8.90724 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.053466 B = 0.006021 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.569704 B = 4649.396262 C = 4721.009079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.049 0.951 9 C 0.067 3.933 10 C -0.141 4.141 11 C -0.097 4.097 12 C -0.160 4.160 13 C -0.083 4.083 14 C 0.026 3.974 15 Cl -0.200 7.200 16 C -0.184 4.184 17 C 0.203 3.797 18 N -0.870 5.870 19 H 0.264 0.736 20 H 0.006 0.994 21 H -0.004 1.004 22 H 0.111 0.889 23 H 0.136 0.864 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.139 0.861 27 H 0.399 0.601 28 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.963 -11.599 2.080 15.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.068 0.932 9 C 0.030 3.970 10 C -0.146 4.146 11 C -0.116 4.116 12 C -0.180 4.180 13 C -0.083 4.083 14 C -0.036 4.036 15 Cl -0.174 7.174 16 C -0.207 4.207 17 C 0.097 3.903 18 N -0.409 5.409 19 H 0.073 0.927 20 H 0.025 0.975 21 H 0.014 0.986 22 H 0.129 0.871 23 H 0.154 0.846 24 H 0.138 0.862 25 H 0.137 0.863 26 H 0.156 0.844 27 H 0.229 0.771 28 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 9.765 -11.623 2.077 15.322 hybrid contribution -0.345 1.312 0.199 1.371 sum 9.420 -10.312 2.276 14.151 Atomic orbital electron populations 1.70082 1.07491 1.27666 1.51637 1.25849 0.95656 1.02751 0.94919 0.85462 0.78885 0.79279 0.77785 1.19252 1.20598 1.20222 1.21334 0.92726 0.91082 1.50188 0.93248 1.17879 0.92625 0.90938 0.95521 1.20049 1.02314 0.99250 0.92952 1.20882 0.97852 0.96134 0.96722 1.20871 1.00073 0.98815 0.98246 1.19515 0.99164 0.96808 0.92859 1.23251 0.92919 0.80230 1.07232 1.98724 1.80658 1.39080 1.98937 1.20544 1.02453 0.98905 0.98815 1.17763 0.93519 0.92372 0.86607 1.42508 1.52745 1.40531 1.05157 0.92720 0.97536 0.98615 0.87133 0.84598 0.86227 0.86330 0.84367 0.77132 0.76811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.80 13.29 21.45 0.28 -54.51 15 2 C 0.01 0.35 5.46 84.66 0.46 0.82 15 3 Si 0.96 43.76 29.54 68.60 2.03 45.78 15 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 15 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 7 C -0.52 -28.65 9.09 25.60 0.23 -28.42 15 8 H 0.05 2.76 7.74 -2.91 -0.02 2.74 15 9 C 0.07 3.54 4.54 29.10 0.13 3.67 15 10 C -0.14 -6.21 5.09 -19.73 -0.10 -6.31 15 11 C -0.10 -3.81 9.67 22.25 0.22 -3.60 15 12 C -0.16 -5.02 9.70 22.29 0.22 -4.80 15 13 C -0.08 -2.32 5.25 -19.89 -0.10 -2.42 15 14 C 0.03 0.51 6.78 71.23 0.48 0.99 15 15 Cl -0.20 -4.62 29.13 -2.72 -0.08 -4.70 15 16 C -0.18 -5.64 9.55 22.40 0.21 -5.42 15 17 C 0.20 7.67 6.74 38.22 0.26 7.93 15 18 N -0.87 -29.85 8.99 -51.37 -0.46 -30.31 15 19 H 0.26 14.65 8.31 -92.71 -0.77 13.88 15 20 H 0.01 0.35 6.82 -2.39 -0.02 0.34 15 21 H 0.00 -0.26 8.05 -2.39 -0.02 -0.28 15 22 H 0.11 4.33 8.06 -2.91 -0.02 4.31 15 23 H 0.14 3.48 8.06 -2.91 -0.02 3.45 15 24 H 0.12 1.86 8.08 -2.39 -0.02 1.84 15 25 H 0.12 1.82 8.08 -2.38 -0.02 1.80 15 26 H 0.14 3.41 8.06 -2.91 -0.02 3.38 15 27 H 0.40 15.52 6.94 -92.71 -0.64 14.88 15 28 H 0.40 10.60 8.84 -92.71 -0.82 9.78 15 Total: -1.00 -63.18 261.17 3.50 -59.68 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -0.28 Total: 21.62 kcal Atomic # 6 Polarization: -39.57 SS G_CDS: 2.01 Total: -37.56 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -0.18 Total: -84.82 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 17 Polarization: -4.62 SS G_CDS: -0.08 Total: -4.70 kcal Total: -63.18 3.50 -59.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307236129.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.073 kcal (2) G-P(sol) polarization free energy of solvation -63.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds