Wall clock time and date at job start Mon Mar 30 2020 03:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00134 * 2 1 4 4 H 1.48503 * 109.47126 * 239.99778 * 3 2 1 5 5 H 1.48495 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47148 * 119.99707 * 3 2 1 7 7 C 1.37875 * 119.99430 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99852 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00441 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47093 * 180.02562 * 9 7 2 11 11 C 1.38316 * 119.92539 * 270.02021 * 10 9 7 12 12 C 1.38078 * 120.07858 * 179.97438 * 11 10 9 13 13 C 1.38931 * 119.92118 * 359.77184 * 12 11 10 14 14 N 1.39681 * 120.07276 * 180.22807 * 13 12 11 15 15 C 1.38886 * 119.85408 * 0.45839 * 13 12 11 16 16 C 1.50703 * 120.03994 * 179.79413 * 15 13 12 17 17 Cl 1.80300 * 109.47128 * 89.72486 * 16 15 13 18 18 C 1.38126 * 119.92196 * 359.51837 * 15 13 12 19 19 H 0.97001 * 119.99726 * 0.02562 * 1 2 3 20 20 H 1.08994 * 109.47383 * 60.00178 * 9 7 2 21 21 H 1.09001 * 109.47084 * 299.99698 * 9 7 2 22 22 H 1.08007 * 119.95629 * 0.02562 * 11 10 9 23 23 H 1.07997 * 120.03745 * 179.97438 * 12 11 10 24 24 H 0.97002 * 119.99710 * 180.22831 * 14 13 12 25 25 H 0.96998 * 120.00000 * 0.23047 * 14 13 12 26 26 H 1.09002 * 109.47152 * 329.72313 * 16 15 13 27 27 H 1.09001 * 109.46980 * 209.72413 * 16 15 13 28 28 H 1.08001 * 119.96039 * 180.25212 * 18 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0018 11 6 2.6798 -4.1694 -1.1964 12 6 3.5775 -5.2185 -1.1989 13 6 4.0327 -5.7440 0.0040 14 7 4.9444 -6.8022 0.0051 15 6 3.5755 -5.2179 1.2053 16 6 4.0630 -5.7878 2.5125 17 17 5.5494 -4.9104 3.0336 18 6 2.6779 -4.1681 1.2006 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6239 -2.5567 0.8903 22 1 2.3289 -3.7574 -2.1311 23 1 3.9278 -5.6280 -2.1348 24 1 5.2590 -7.1704 0.8456 25 1 5.2630 -7.1688 -0.8345 26 1 4.2915 -6.8459 2.3849 27 1 3.2883 -5.6723 3.2706 28 1 2.3251 -3.7559 2.1344 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307269721.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:13 Heat of formation + Delta-G solvation = -4.102651 kcal Electronic energy + Delta-G solvation = -12842.882941 eV Core-core repulsion = 10497.490284 eV Total energy + Delta-G solvation = -2345.392657 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.12275 -35.74255 -34.77642 -32.73327 -31.76375 -29.86666 -26.77137 -25.77675 -22.92512 -21.67621 -19.62983 -16.87171 -16.56151 -16.21728 -14.86645 -14.35953 -14.18682 -13.95419 -13.26393 -12.91577 -12.84914 -12.51859 -12.04499 -11.38866 -11.21505 -10.85339 -10.59563 -10.45933 -10.25317 -10.07759 -10.00519 -9.43432 -9.16015 -8.36340 -8.25118 -6.89147 -5.97137 -4.01288 1.68599 2.25532 2.81472 3.36495 3.40014 3.44202 4.10886 4.43507 4.60804 4.93285 4.97223 5.33176 5.36391 5.57603 5.92107 6.03373 6.25993 6.42714 6.59278 6.76950 7.18800 7.24437 7.43062 7.61501 7.88357 7.92820 7.96708 7.98384 8.40781 9.04315 9.62422 11.11547 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.029887 B = 0.007420 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.624870 B = 3772.581401 C = 4260.321584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.054 3.946 10 C -0.087 4.087 11 C -0.066 4.066 12 C -0.199 4.199 13 C 0.207 3.793 14 N -0.885 5.885 15 C -0.190 4.190 16 C 0.027 3.973 17 Cl -0.194 7.194 18 C -0.057 4.057 19 H 0.261 0.739 20 H 0.026 0.974 21 H 0.025 0.975 22 H 0.119 0.881 23 H 0.112 0.888 24 H 0.390 0.610 25 H 0.393 0.607 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.615 -13.202 1.935 15.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.017 3.983 10 C -0.089 4.089 11 C -0.084 4.084 12 C -0.222 4.222 13 C 0.104 3.896 14 N -0.426 5.426 15 C -0.195 4.195 16 C -0.035 4.035 17 Cl -0.168 7.168 18 C -0.076 4.076 19 H 0.071 0.929 20 H 0.044 0.956 21 H 0.044 0.956 22 H 0.137 0.863 23 H 0.130 0.870 24 H 0.219 0.781 25 H 0.221 0.779 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.528 -12.972 1.985 15.129 hybrid contribution 0.821 0.739 -0.022 1.105 sum 8.349 -12.233 1.963 14.940 Atomic orbital electron populations 1.69949 1.06007 1.26786 1.50815 1.25000 0.94845 0.99156 0.95316 0.86635 0.79560 0.82981 0.78748 1.20215 1.21319 1.20175 1.21094 0.93057 0.90068 1.50572 0.92564 1.18239 0.92412 0.89544 0.98063 1.20451 0.99469 0.97403 0.91561 1.20934 0.95104 0.93971 0.98425 1.20469 1.04436 1.01946 0.95344 1.17373 0.90237 0.88707 0.93254 1.42396 1.51252 1.38884 1.10067 1.19034 1.05600 1.03384 0.91510 1.22876 0.88070 0.96223 0.96378 1.98726 1.44891 1.80998 1.92168 1.20733 0.95018 0.93204 0.98596 0.92898 0.95589 0.95625 0.86285 0.87010 0.78119 0.77935 0.89604 0.88420 0.86303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.29 55.43 0.74 -25.94 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 15 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 15 7 C -0.51 -14.43 9.09 -34.44 -0.31 -14.74 15 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 15 9 C 0.05 1.40 5.10 -29.04 -0.15 1.25 15 10 C -0.09 -1.88 5.07 -104.59 -0.53 -2.42 15 11 C -0.07 -1.26 9.69 -39.61 -0.38 -1.65 15 12 C -0.20 -3.27 9.90 -39.38 -0.39 -3.66 15 13 C 0.21 3.18 6.73 -83.79 -0.56 2.61 15 14 N -0.88 -10.01 8.99 32.41 0.29 -9.72 15 15 C -0.19 -3.09 5.28 -104.42 -0.55 -3.64 15 16 C 0.03 0.35 6.34 36.01 0.23 0.58 15 17 Cl -0.19 -2.80 29.13 -51.86 -1.51 -4.31 15 18 C -0.06 -1.09 9.35 -39.61 -0.37 -1.47 15 19 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 20 H 0.03 0.70 8.08 -51.93 -0.42 0.28 15 21 H 0.03 0.69 8.08 -51.93 -0.42 0.27 15 22 H 0.12 2.22 8.06 -52.48 -0.42 1.80 15 23 H 0.11 1.54 8.06 -52.49 -0.42 1.12 15 24 H 0.39 3.85 6.83 -40.82 -0.28 3.57 15 25 H 0.39 3.63 8.84 -40.82 -0.36 3.27 15 26 H 0.09 0.88 6.56 -51.93 -0.34 0.54 15 27 H 0.10 1.14 8.09 -51.93 -0.42 0.72 15 28 H 0.12 2.26 8.06 -52.49 -0.42 1.84 15 LS Contribution 260.98 15.07 3.93 3.93 Total: -1.00 -30.49 260.98 -7.74 -38.23 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -3.05 Total: 2.50 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -3.12 Total: -21.57 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 1.03 Total: -35.65 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 17 Polarization: -2.80 SS G_CDS: -1.51 Total: -4.31 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.49 -7.74 -38.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307269721.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.130 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds