Wall clock time and date at job start Mon Mar 30 2020 03:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00134 * 2 1 4 4 H 1.48503 * 109.47126 * 239.99778 * 3 2 1 5 5 H 1.48495 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47148 * 119.99707 * 3 2 1 7 7 C 1.37875 * 119.99430 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99852 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00441 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47093 * 180.02562 * 9 7 2 11 11 C 1.38316 * 119.92539 * 270.02021 * 10 9 7 12 12 C 1.38078 * 120.07858 * 179.97438 * 11 10 9 13 13 C 1.38931 * 119.92118 * 359.77184 * 12 11 10 14 14 N 1.39681 * 120.07276 * 180.22807 * 13 12 11 15 15 C 1.38886 * 119.85408 * 0.45839 * 13 12 11 16 16 C 1.50703 * 120.03994 * 179.79413 * 15 13 12 17 17 Cl 1.80300 * 109.47128 * 89.72486 * 16 15 13 18 18 C 1.38126 * 119.92196 * 359.51837 * 15 13 12 19 19 H 0.97001 * 119.99726 * 0.02562 * 1 2 3 20 20 H 1.08994 * 109.47383 * 60.00178 * 9 7 2 21 21 H 1.09001 * 109.47084 * 299.99698 * 9 7 2 22 22 H 1.08007 * 119.95629 * 0.02562 * 11 10 9 23 23 H 1.07997 * 120.03745 * 179.97438 * 12 11 10 24 24 H 0.97002 * 119.99710 * 180.22831 * 14 13 12 25 25 H 0.96998 * 120.00000 * 0.23047 * 14 13 12 26 26 H 1.09002 * 109.47152 * 329.72313 * 16 15 13 27 27 H 1.09001 * 109.46980 * 209.72413 * 16 15 13 28 28 H 1.08001 * 119.96039 * 180.25212 * 18 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0018 11 6 2.6798 -4.1694 -1.1964 12 6 3.5775 -5.2185 -1.1989 13 6 4.0327 -5.7440 0.0040 14 7 4.9444 -6.8022 0.0051 15 6 3.5755 -5.2179 1.2053 16 6 4.0630 -5.7878 2.5125 17 17 5.5494 -4.9104 3.0336 18 6 2.6779 -4.1681 1.2006 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6239 -2.5567 0.8903 22 1 2.3289 -3.7574 -2.1311 23 1 3.9278 -5.6280 -2.1348 24 1 5.2590 -7.1704 0.8456 25 1 5.2630 -7.1688 -0.8345 26 1 4.2915 -6.8459 2.3849 27 1 3.2883 -5.6723 3.2706 28 1 2.3251 -3.7559 2.1344 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307269721.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:13 Heat of formation + Delta-G solvation = -22.754014 kcal Electronic energy + Delta-G solvation = -12843.691725 eV Core-core repulsion = 10497.490284 eV Total energy + Delta-G solvation = -2346.201441 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.47560 -36.90576 -36.22124 -34.67177 -33.04359 -31.54443 -28.33633 -27.22398 -24.81750 -23.05166 -21.11539 -18.45978 -18.01335 -17.77229 -16.67884 -15.81836 -15.40276 -15.23413 -14.60390 -14.43237 -14.32138 -14.13192 -13.52162 -13.18665 -13.14615 -12.54776 -12.43255 -12.08197 -11.78471 -11.48616 -11.27351 -11.16272 -10.92734 -10.56775 -9.63287 -8.34362 -8.01492 -6.28918 0.36309 0.84465 1.39943 1.42654 1.50775 1.66008 2.42154 3.05130 3.13737 3.16185 3.75223 3.90455 4.17868 4.41371 4.51359 4.67214 4.79851 5.08009 5.11499 5.36494 5.39981 5.51824 5.66776 5.80690 6.05532 6.19543 6.26724 6.67340 6.84145 7.07893 7.39345 8.92413 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.029887 B = 0.007420 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.624870 B = 3772.581401 C = 4260.321584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.526 4.526 8 H 0.051 0.949 9 C 0.064 3.936 10 C -0.127 4.127 11 C -0.077 4.077 12 C -0.197 4.197 13 C 0.221 3.779 14 N -0.863 5.863 15 C -0.191 4.191 16 C 0.030 3.970 17 Cl -0.205 7.205 18 C -0.066 4.066 19 H 0.265 0.735 20 H 0.000 1.000 21 H -0.002 1.002 22 H 0.113 0.887 23 H 0.144 0.856 24 H 0.402 0.598 25 H 0.408 0.592 26 H 0.121 0.879 27 H 0.109 0.891 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.847 -14.624 1.986 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.564 4.564 8 H 0.069 0.931 9 C 0.027 3.973 10 C -0.128 4.128 11 C -0.096 4.096 12 C -0.219 4.219 13 C 0.116 3.884 14 N -0.405 5.405 15 C -0.196 4.196 16 C -0.032 4.032 17 Cl -0.179 7.179 18 C -0.085 4.085 19 H 0.073 0.927 20 H 0.018 0.982 21 H 0.017 0.983 22 H 0.131 0.869 23 H 0.162 0.838 24 H 0.232 0.768 25 H 0.238 0.762 26 H 0.139 0.861 27 H 0.127 0.873 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.795 -14.439 2.033 17.566 hybrid contribution 0.162 1.043 -0.043 1.056 sum 9.957 -13.396 1.991 16.810 Atomic orbital electron populations 1.70073 1.07578 1.27840 1.51636 1.25888 0.95728 1.02915 0.94774 0.85567 0.78368 0.78457 0.79085 1.19291 1.20490 1.19523 1.21417 0.92961 0.91580 1.50453 0.93113 1.17964 0.92758 0.91155 0.95374 1.20111 1.01039 0.97951 0.93743 1.20925 0.96203 0.95217 0.97270 1.20699 1.03223 1.00745 0.97237 1.17452 0.89702 0.88766 0.92519 1.42337 1.49419 1.37053 1.11721 1.19212 1.04510 1.02254 0.93619 1.23037 0.87849 0.97439 0.94887 1.98731 1.45442 1.81525 1.92160 1.20686 0.96105 0.94446 0.97291 0.92666 0.98196 0.98329 0.86858 0.83840 0.76751 0.76153 0.86134 0.87293 0.87263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.16 13.29 21.45 0.28 -56.87 15 2 C 0.00 0.28 5.46 84.65 0.46 0.74 15 3 Si 0.96 45.42 29.54 68.60 2.03 47.45 15 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 15 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 15 7 C -0.53 -30.90 9.09 25.60 0.23 -30.67 15 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 15 9 C 0.06 3.54 5.10 29.10 0.15 3.68 15 10 C -0.13 -5.67 5.07 -19.84 -0.10 -5.77 15 11 C -0.08 -3.00 9.69 22.25 0.22 -2.79 15 12 C -0.20 -5.99 9.90 22.40 0.22 -5.77 15 13 C 0.22 6.10 6.73 38.21 0.26 6.36 15 14 N -0.86 -15.57 8.99 -51.37 -0.46 -16.03 15 15 C -0.19 -5.81 5.28 -19.73 -0.10 -5.91 15 16 C 0.03 0.68 6.34 71.24 0.45 1.13 15 17 Cl -0.20 -5.42 29.13 -2.72 -0.08 -5.50 15 18 C -0.07 -2.59 9.35 22.25 0.21 -2.38 15 19 H 0.26 15.25 8.31 -92.71 -0.77 14.48 15 20 H 0.00 -0.02 8.08 -2.39 -0.02 -0.04 15 21 H 0.00 -0.09 8.08 -2.39 -0.02 -0.11 15 22 H 0.11 4.38 8.06 -2.91 -0.02 4.36 15 23 H 0.14 3.41 8.06 -2.91 -0.02 3.39 15 24 H 0.40 5.90 6.83 -92.71 -0.63 5.27 15 25 H 0.41 5.49 8.84 -92.71 -0.82 4.67 15 26 H 0.12 1.91 6.56 -2.39 -0.02 1.89 15 27 H 0.11 2.27 8.09 -2.39 -0.02 2.25 15 28 H 0.11 4.33 8.06 -2.91 -0.02 4.31 15 Total: -1.00 -67.72 260.98 3.49 -64.23 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -0.27 Total: 8.10 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 1.99 Total: -41.38 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -0.18 Total: -72.90 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 17 Polarization: -5.42 SS G_CDS: -0.08 Total: -5.50 kcal Total: -67.72 3.49 -64.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307269721.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.473 kcal (2) G-P(sol) polarization free energy of solvation -67.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds