Wall clock time and date at job start Mon Mar 30 2020 03:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 C 1.50698 * 109.46993 * 179.97438 * 9 7 2 11 11 C 1.38126 * 120.03992 * 265.00526 * 10 9 7 12 12 C 1.38268 * 120.07598 * 179.97438 * 11 10 9 13 13 C 1.50703 * 119.92618 * 179.97438 * 12 11 10 14 14 Cl 1.80299 * 109.47211 * 89.99547 * 13 12 11 15 15 C 1.38308 * 120.14699 * 359.94925 * 12 11 10 16 16 C 1.38078 * 120.07649 * 0.02935 * 15 12 11 17 17 C 1.38893 * 120.03718 * 84.72253 * 10 9 7 18 18 N 1.39667 * 120.07473 * 0.02591 * 17 10 9 19 19 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 21 21 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 22 22 H 1.07997 * 119.96565 * 359.96896 * 11 10 9 23 23 H 1.09002 * 109.46585 * 210.00140 * 13 12 11 24 24 H 1.09003 * 109.46661 * 329.99609 * 13 12 11 25 25 H 1.08001 * 119.95990 * 180.02562 * 15 12 11 26 26 H 1.08009 * 120.03623 * 179.97438 * 16 15 12 27 27 H 0.97007 * 120.00216 * 0.02562 * 18 17 10 28 28 H 0.97002 * 120.00753 * 179.97438 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 6 4.0139 -2.6148 -0.0032 11 6 4.3476 -3.2281 1.1887 12 6 4.8081 -4.5318 1.1920 13 6 5.1717 -5.1974 2.4942 14 17 3.7206 -6.0261 3.1713 15 6 4.9353 -5.2266 0.0028 16 6 4.6031 -4.6197 -1.1921 17 6 4.1364 -3.3111 -1.1987 18 7 3.7949 -2.6959 -2.4051 19 1 -0.4850 0.8401 0.0004 20 1 3.8712 -0.6827 -0.8987 21 1 3.8785 -0.6777 0.8813 22 1 4.2487 -2.6887 2.1191 23 1 5.9602 -5.9296 2.3202 24 1 5.5234 -4.4455 3.2007 25 1 5.2949 -6.2449 0.0090 26 1 4.7031 -5.1627 -2.1204 27 1 3.4720 -1.7811 -2.4088 28 1 3.8812 -3.1830 -3.2396 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307269758.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:17 Heat of formation + Delta-G solvation = -2.378032 kcal Electronic energy + Delta-G solvation = -12960.537849 eV Core-core repulsion = 10615.219977 eV Total energy + Delta-G solvation = -2345.317872 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.08519 -35.78420 -34.36676 -33.20016 -31.38122 -30.01864 -27.71653 -25.11633 -23.08373 -21.45672 -19.52795 -16.78623 -16.51749 -16.46312 -14.84123 -14.23976 -14.14090 -14.01864 -13.28962 -12.99469 -12.70161 -12.45739 -12.18201 -11.92969 -11.35746 -10.98899 -10.57740 -10.19766 -10.10640 -10.03318 -9.89684 -9.86456 -9.36944 -8.60790 -8.04906 -6.79987 -6.08768 -4.07901 1.82286 2.08076 2.92969 3.23803 3.33713 3.36080 4.38305 4.44617 4.58314 5.06339 5.08653 5.23193 5.47477 5.53818 5.60929 5.97191 6.20844 6.37191 6.59375 6.70642 6.90569 6.99981 7.11225 7.40314 7.52263 7.67596 8.10572 8.40085 8.50249 8.99345 9.51379 11.04154 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.028378 B = 0.008088 C = 0.007012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.439792 B = 3461.007108 C = 3992.114794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.024 3.976 10 C -0.110 4.110 11 C -0.055 4.055 12 C -0.178 4.178 13 C 0.028 3.972 14 Cl -0.197 7.197 15 C -0.070 4.070 16 C -0.210 4.210 17 C 0.231 3.769 18 N -0.870 5.870 19 H 0.264 0.736 20 H 0.016 0.984 21 H 0.027 0.973 22 H 0.118 0.882 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.407 0.593 28 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.593 -7.815 -0.011 13.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.013 4.013 10 C -0.114 4.114 11 C -0.074 4.074 12 C -0.180 4.180 13 C -0.034 4.034 14 Cl -0.171 7.171 15 C -0.089 4.089 16 C -0.233 4.233 17 C 0.125 3.875 18 N -0.408 5.408 19 H 0.074 0.926 20 H 0.034 0.966 21 H 0.045 0.955 22 H 0.136 0.864 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.129 0.871 26 H 0.130 0.870 27 H 0.239 0.761 28 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 11.324 -7.752 0.074 13.723 hybrid contribution 0.039 1.000 -0.343 1.058 sum 11.363 -6.751 -0.269 13.220 Atomic orbital electron populations 1.69906 1.06252 1.26879 1.50658 1.25020 0.94695 0.98888 0.94667 0.86854 0.80479 0.83931 0.78521 1.20308 1.21256 1.18958 1.20982 0.88366 0.94535 1.50985 0.90822 1.18592 0.97282 0.88585 0.96846 1.19732 1.01969 0.98778 0.90916 1.20641 0.95832 0.93425 0.97480 1.19268 1.09998 0.95556 0.93181 1.22988 0.87561 0.97902 0.94971 1.98723 1.48602 1.82215 1.87511 1.20453 0.98766 0.98145 0.91573 1.20383 1.10360 0.94552 0.98021 1.17702 0.91814 0.91227 0.86795 1.42596 1.74833 1.18285 1.05070 0.92650 0.96608 0.95486 0.86426 0.89151 0.88915 0.87061 0.86983 0.76139 0.78487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.96 55.43 0.77 -26.44 15 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 15 3 Si 0.87 20.88 27.47 -169.99 -4.67 16.21 15 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 15 6 H -0.26 -6.08 6.54 56.52 0.37 -5.71 15 7 C -0.51 -14.12 9.65 -34.44 -0.33 -14.46 15 8 H 0.07 2.29 7.98 -52.49 -0.42 1.87 15 9 C 0.02 0.56 3.60 -29.04 -0.10 0.46 15 10 C -0.11 -2.27 5.09 -104.42 -0.53 -2.80 15 11 C -0.05 -1.03 9.33 -39.61 -0.37 -1.40 15 12 C -0.18 -2.85 5.26 -104.58 -0.55 -3.40 15 13 C 0.03 0.36 6.78 36.01 0.24 0.61 15 14 Cl -0.20 -2.97 29.13 -51.86 -1.51 -4.48 15 15 C -0.07 -1.08 9.69 -39.61 -0.38 -1.46 15 16 C -0.21 -3.40 9.90 -39.38 -0.39 -3.79 15 17 C 0.23 4.29 6.73 -83.79 -0.56 3.73 15 18 N -0.87 -14.47 8.99 32.41 0.29 -14.18 15 19 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 20 H 0.02 0.35 6.27 -51.93 -0.33 0.03 15 21 H 0.03 0.63 7.10 -51.93 -0.37 0.26 15 22 H 0.12 2.15 8.06 -52.49 -0.42 1.72 15 23 H 0.09 0.94 8.08 -51.93 -0.42 0.52 15 24 H 0.09 1.07 8.08 -51.93 -0.42 0.65 15 25 H 0.11 1.41 8.06 -52.49 -0.42 0.99 15 26 H 0.11 1.53 8.06 -52.48 -0.42 1.11 15 27 H 0.41 7.32 6.94 -40.82 -0.28 7.03 15 28 H 0.39 5.13 8.84 -40.82 -0.36 4.77 15 LS Contribution 257.57 15.07 3.88 3.88 Total: -1.00 -30.45 257.57 -7.34 -37.80 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -3.03 Total: 7.88 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -3.08 Total: -20.67 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 1.06 Total: -40.62 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Atomic # 17 Polarization: -2.97 SS G_CDS: -1.51 Total: -4.48 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.45 -7.34 -37.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307269758.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.418 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds