Wall clock time and date at job start Mon Mar 30 2020 03:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 C 1.50698 * 109.46993 * 179.97438 * 9 7 2 11 11 C 1.38126 * 120.03992 * 265.00526 * 10 9 7 12 12 C 1.38268 * 120.07598 * 179.97438 * 11 10 9 13 13 C 1.50703 * 119.92618 * 179.97438 * 12 11 10 14 14 Cl 1.80299 * 109.47211 * 89.99547 * 13 12 11 15 15 C 1.38308 * 120.14699 * 359.94925 * 12 11 10 16 16 C 1.38078 * 120.07649 * 0.02935 * 15 12 11 17 17 C 1.38893 * 120.03718 * 84.72253 * 10 9 7 18 18 N 1.39667 * 120.07473 * 0.02591 * 17 10 9 19 19 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 21 21 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 22 22 H 1.07997 * 119.96565 * 359.96896 * 11 10 9 23 23 H 1.09002 * 109.46585 * 210.00140 * 13 12 11 24 24 H 1.09003 * 109.46661 * 329.99609 * 13 12 11 25 25 H 1.08001 * 119.95990 * 180.02562 * 15 12 11 26 26 H 1.08009 * 120.03623 * 179.97438 * 16 15 12 27 27 H 0.97007 * 120.00216 * 0.02562 * 18 17 10 28 28 H 0.97002 * 120.00753 * 179.97438 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 6 4.0139 -2.6148 -0.0032 11 6 4.3476 -3.2281 1.1887 12 6 4.8081 -4.5318 1.1920 13 6 5.1717 -5.1974 2.4942 14 17 3.7206 -6.0261 3.1713 15 6 4.9353 -5.2266 0.0028 16 6 4.6031 -4.6197 -1.1921 17 6 4.1364 -3.3111 -1.1987 18 7 3.7949 -2.6959 -2.4051 19 1 -0.4850 0.8401 0.0004 20 1 3.8712 -0.6827 -0.8987 21 1 3.8785 -0.6777 0.8813 22 1 4.2487 -2.6887 2.1191 23 1 5.9602 -5.9296 2.3202 24 1 5.5234 -4.4455 3.2007 25 1 5.2949 -6.2449 0.0090 26 1 4.7031 -5.1627 -2.1204 27 1 3.4720 -1.7811 -2.4088 28 1 3.8812 -3.1830 -3.2396 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307269758.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:17 Heat of formation + Delta-G solvation = -21.640552 kcal Electronic energy + Delta-G solvation = -12961.373134 eV Core-core repulsion = 10615.219977 eV Total energy + Delta-G solvation = -2346.153157 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.43962 -36.95226 -35.73785 -35.06225 -33.15311 -31.23504 -29.46144 -26.34484 -24.89349 -22.88435 -20.98955 -18.93819 -17.86128 -17.79777 -16.47913 -15.86670 -15.34611 -15.21257 -14.81968 -14.52517 -14.15886 -14.01638 -13.62138 -13.53248 -13.00781 -12.56650 -12.28446 -11.92814 -11.67425 -11.44444 -11.29916 -11.16378 -11.12605 -10.76703 -9.46548 -8.28024 -8.15202 -6.31632 0.55385 0.71235 1.35359 1.38998 1.50214 1.79053 2.35793 3.06664 3.11446 3.27098 3.90569 4.00661 4.23300 4.35610 4.54795 4.64835 4.84296 4.94612 5.02885 5.22689 5.30125 5.54918 5.59948 5.75403 5.92105 6.15314 6.31629 6.71814 6.77480 7.15183 7.31742 8.89522 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.028378 B = 0.008088 C = 0.007012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.439792 B = 3461.007108 C = 3992.114794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.008 3.992 3 Si 0.949 3.051 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.249 1.249 7 C -0.508 4.508 8 H 0.022 0.978 9 C 0.033 3.967 10 C -0.152 4.152 11 C -0.069 4.069 12 C -0.178 4.178 13 C 0.032 3.968 14 Cl -0.216 7.216 15 C -0.063 4.063 16 C -0.209 4.209 17 C 0.215 3.785 18 N -0.867 5.867 19 H 0.266 0.734 20 H 0.027 0.973 21 H 0.024 0.976 22 H 0.112 0.888 23 H 0.125 0.875 24 H 0.106 0.894 25 H 0.148 0.852 26 H 0.141 0.859 27 H 0.399 0.601 28 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.955 -8.496 -0.294 16.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.189 4.189 3 Si 0.772 3.228 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.172 1.172 7 C -0.546 4.546 8 H 0.040 0.960 9 C -0.004 4.004 10 C -0.156 4.156 11 C -0.088 4.088 12 C -0.180 4.180 13 C -0.030 4.030 14 Cl -0.190 7.190 15 C -0.082 4.082 16 C -0.232 4.232 17 C 0.108 3.892 18 N -0.406 5.406 19 H 0.075 0.925 20 H 0.045 0.955 21 H 0.042 0.958 22 H 0.130 0.870 23 H 0.143 0.857 24 H 0.124 0.876 25 H 0.165 0.835 26 H 0.159 0.841 27 H 0.229 0.771 28 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 13.711 -8.462 -0.226 16.114 hybrid contribution -0.701 1.072 -0.258 1.307 sum 13.010 -7.390 -0.485 14.970 Atomic orbital electron populations 1.70076 1.08372 1.28064 1.52608 1.25967 0.95484 1.03200 0.94219 0.85684 0.79354 0.78332 0.79435 1.18603 1.21330 1.17239 1.21127 0.90862 0.92489 1.50158 0.95985 1.18396 0.93975 0.91089 0.96936 1.19675 1.05072 0.98083 0.92810 1.20764 0.96461 0.94908 0.96690 1.19538 1.08874 0.94493 0.95120 1.23192 0.87160 0.98979 0.93634 1.98728 1.50052 1.82490 1.87688 1.20929 0.96998 0.99488 0.90804 1.20759 1.09073 0.93551 0.99789 1.17928 0.92362 0.92313 0.86596 1.42559 1.74583 1.18000 1.05482 0.92546 0.95495 0.95793 0.87016 0.85668 0.87561 0.83457 0.84096 0.77122 0.76638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.49 13.96 21.45 0.30 -59.19 15 2 C 0.01 0.46 5.47 84.66 0.46 0.93 15 3 Si 0.95 43.29 27.47 68.60 1.88 45.17 15 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 15 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 15 6 H -0.25 -10.61 6.54 99.48 0.65 -9.96 15 7 C -0.51 -29.07 9.65 25.60 0.25 -28.83 15 8 H 0.02 1.44 7.98 -2.92 -0.02 1.42 15 9 C 0.03 1.56 3.60 29.10 0.10 1.67 15 10 C -0.15 -6.30 5.09 -19.73 -0.10 -6.40 15 11 C -0.07 -2.57 9.33 22.25 0.21 -2.36 15 12 C -0.18 -5.31 5.26 -19.84 -0.10 -5.41 15 13 C 0.03 0.74 6.78 71.24 0.48 1.22 15 14 Cl -0.22 -6.11 29.13 -2.72 -0.08 -6.19 15 15 C -0.06 -1.73 9.69 22.25 0.22 -1.52 15 16 C -0.21 -6.20 9.90 22.40 0.22 -5.98 15 17 C 0.21 7.78 6.73 38.22 0.26 8.04 15 18 N -0.87 -28.27 8.99 -51.37 -0.46 -28.74 15 19 H 0.27 15.51 8.31 -92.71 -0.77 14.74 15 20 H 0.03 1.19 6.27 -2.39 -0.01 1.17 15 21 H 0.02 1.11 7.10 -2.39 -0.02 1.10 15 22 H 0.11 4.13 8.06 -2.91 -0.02 4.10 15 23 H 0.13 2.03 8.08 -2.39 -0.02 2.02 15 24 H 0.11 2.16 8.08 -2.39 -0.02 2.14 15 25 H 0.15 2.97 8.06 -2.91 -0.02 2.94 15 26 H 0.14 3.31 8.06 -2.91 -0.02 3.28 15 27 H 0.40 14.32 6.94 -92.70 -0.64 13.68 15 28 H 0.40 10.11 8.84 -92.71 -0.82 9.29 15 Total: -1.00 -67.82 257.57 3.30 -64.52 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.33 Total: 23.08 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 2.00 Total: -38.65 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -0.16 Total: -87.93 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.17 kcal Atomic # 17 Polarization: -6.11 SS G_CDS: -0.08 Total: -6.19 kcal Total: -67.82 3.30 -64.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307269758.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.880 kcal (2) G-P(sol) polarization free energy of solvation -67.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds