Wall clock time and date at job start Mon Mar 30 2020 02:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38481 * 119.65784 * 2 1 4 4 C 1.38010 * 120.13157 * 179.97438 * 3 2 1 5 5 F 1.35098 * 120.26667 * 180.02562 * 4 3 2 6 6 C 1.41724 * 119.46182 * 0.02562 * 4 3 2 7 7 C 1.40015 * 120.32648 * 179.97438 * 6 4 3 8 8 H 1.08002 * 119.99700 * 221.32037 * 7 6 4 9 9 C 1.46610 * 119.99996 * 41.31400 * 7 6 4 10 10 N 1.29471 * 120.00044 * 11.89449 * 9 7 6 11 11 Si 1.86808 * 119.99820 * 191.89295 * 9 7 6 12 12 H 1.48494 * 109.46954 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46968 * 120.00231 * 11 9 7 14 14 H 1.48499 * 109.46601 * 240.00167 * 11 9 7 15 15 C 1.41359 * 119.34273 * 359.97438 * 6 4 3 16 16 N 1.48016 * 120.07490 * 179.72281 * 15 6 4 17 17 O 1.31694 * 119.99989 * 186.15670 * 16 15 6 18 18 O 1.31699 * 120.00018 * 6.15732 * 16 15 6 19 19 C 1.36273 * 119.84458 * 0.02562 * 15 6 4 20 20 H 1.09004 * 109.46913 * 90.00175 * 1 2 3 21 21 H 1.09000 * 109.46652 * 209.99800 * 1 2 3 22 22 H 1.08994 * 109.46872 * 330.00189 * 1 2 3 23 23 H 1.08003 * 119.93429 * 359.97438 * 3 2 1 24 24 H 0.97005 * 120.00063 * 179.97438 * 10 9 7 25 25 H 1.08003 * 119.72650 * 179.97438 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1923 1.2034 0.0000 4 6 3.5723 1.2148 0.0005 5 9 4.2436 2.3872 0.0011 6 6 4.2796 -0.0134 0.0005 7 6 5.6797 -0.0229 0.0005 8 1 6.2148 -0.7290 -0.6171 9 6 6.4192 0.9257 0.8387 10 7 5.7974 1.6106 1.7446 11 14 8.2588 1.1463 0.5997 12 1 8.7265 0.2546 -0.4917 13 1 8.5456 2.5586 0.2416 14 1 8.9663 0.8014 1.8590 15 6 3.5574 -1.2286 0.0005 16 7 4.2796 -2.5206 -0.0057 17 8 3.6106 -3.6483 -0.1280 18 8 5.5912 -2.5424 0.1111 19 6 2.1948 -1.2077 0.0000 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3632 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6456 2.1349 -0.0004 24 1 6.2868 2.2379 2.2995 25 1 1.6450 -2.1373 -0.0004 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307272947.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:37 Heat of formation + Delta-G solvation = -18.539117 kcal Electronic energy + Delta-G solvation = -15274.353872 eV Core-core repulsion = 12364.165734 eV Total energy + Delta-G solvation = -2910.188139 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.62546 -38.53876 -36.51431 -34.57771 -32.70997 -31.87393 -29.93905 -28.11092 -25.48024 -23.91624 -21.30351 -20.48162 -18.37872 -16.71514 -16.63053 -15.87158 -15.01678 -14.84499 -14.67516 -14.53792 -14.06132 -13.11018 -12.94490 -12.52552 -12.28818 -11.86116 -11.70026 -11.45686 -11.04781 -10.93772 -10.69458 -10.41008 -9.80569 -9.61791 -9.28357 -9.15775 -8.25495 -7.86542 -7.60265 -5.09104 0.83162 2.16056 2.54795 2.75568 2.79731 2.86238 2.94521 3.48545 3.87655 4.59507 5.26471 5.52412 5.70758 5.89731 5.97427 6.06875 6.11620 6.23533 6.40800 6.60991 6.85725 6.90369 7.20128 7.34543 7.48463 7.69939 7.80617 8.07383 8.60201 9.22996 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.025476 B = 0.013110 C = 0.009007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.796708 B = 2135.327893 C = 3108.050881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.176 4.176 3 C -0.114 4.114 4 C 0.074 3.926 5 F -0.132 7.132 6 C 0.062 3.938 7 C -0.319 4.319 8 H 0.128 0.872 9 C 0.055 3.945 10 N -0.702 5.702 11 Si 0.940 3.060 12 H -0.244 1.244 13 H -0.263 1.263 14 H -0.261 1.261 15 C -0.079 4.079 16 N 0.035 4.965 17 O -0.338 6.338 18 O -0.259 6.259 19 C -0.037 4.037 20 H 0.055 0.945 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.119 0.881 24 H 0.307 0.693 25 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.066 5.481 -0.777 5.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.179 4.179 3 C -0.134 4.134 4 C 0.053 3.947 5 F -0.110 7.110 6 C 0.057 3.943 7 C -0.346 4.346 8 H 0.145 0.855 9 C -0.178 4.178 10 N -0.322 5.322 11 Si 0.760 3.240 12 H -0.166 1.166 13 H -0.187 1.187 14 H -0.186 1.186 15 C -0.180 4.180 16 N 0.462 4.538 17 O -0.485 6.485 18 O -0.426 6.426 19 C -0.056 4.056 20 H 0.074 0.926 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.137 0.863 24 H 0.120 0.880 25 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.311 5.814 -0.594 6.285 hybrid contribution 0.921 0.036 0.144 0.933 sum -1.389 5.851 -0.450 6.030 Atomic orbital electron populations 1.20458 0.91423 1.01571 1.00998 1.18911 0.95041 0.90982 1.12962 1.20698 0.92105 0.98098 1.02512 1.17721 0.88732 0.80819 1.07391 1.91388 1.80990 1.44817 1.93812 1.17089 0.94046 0.88323 0.94865 1.22008 0.90926 1.09169 1.12474 0.85486 1.27903 1.04219 0.92201 0.93505 1.69001 1.41628 1.11975 1.09554 0.85685 0.77474 0.79780 0.81038 1.16645 1.18723 1.18573 1.19427 0.90556 0.80607 1.27368 1.49705 1.02241 1.03209 0.98671 1.96086 1.68043 1.19199 1.65209 1.96084 0.90657 1.96076 1.59765 1.20044 0.91489 0.98225 0.95889 0.92587 0.92442 0.92523 0.86339 0.88032 0.85802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 10.00 36.01 0.36 -0.93 15 2 C -0.18 -3.41 5.91 -104.25 -0.62 -4.03 15 3 C -0.11 -2.29 9.65 -39.58 -0.38 -2.67 15 4 C 0.07 1.71 6.72 -38.34 -0.26 1.45 15 5 F -0.13 -3.01 14.48 2.25 0.03 -2.98 15 6 C 0.06 1.57 5.41 -106.71 -0.58 0.99 15 7 C -0.32 -7.88 7.48 -35.54 -0.27 -8.15 15 8 H 0.13 3.19 6.29 -52.49 -0.33 2.86 15 9 C 0.05 1.21 4.91 -15.17 -0.07 1.13 15 10 N -0.70 -15.71 11.13 55.99 0.62 -15.09 15 11 Si 0.94 16.56 29.66 -169.99 -5.04 11.52 15 12 H -0.24 -4.35 7.11 56.52 0.40 -3.94 15 13 H -0.26 -4.40 7.11 56.52 0.40 -4.00 15 14 H -0.26 -4.50 7.11 56.52 0.40 -4.10 15 15 C -0.08 -2.02 6.89 -79.47 -0.55 -2.57 15 16 N 0.04 0.98 4.98 34.20 0.17 1.15 15 17 O -0.34 -9.43 19.14 -31.56 -0.60 -10.04 15 18 O -0.26 -7.31 16.39 -31.57 -0.52 -7.82 15 19 C -0.04 -0.82 9.15 -40.01 -0.37 -1.19 15 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.06 0.79 8.08 -51.93 -0.42 0.37 15 22 H 0.06 0.74 8.08 -51.93 -0.42 0.32 15 23 H 0.12 2.02 8.06 -52.48 -0.42 1.60 15 24 H 0.31 5.94 8.27 -40.82 -0.34 5.61 15 25 H 0.12 2.61 7.54 -52.48 -0.40 2.21 15 LS Contribution 237.68 15.07 3.58 3.58 Total: -1.00 -28.36 237.68 -6.03 -34.39 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -1.54 Total: 1.26 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -2.73 Total: -15.96 kcal Atomic # 7 Polarization: -14.74 SS G_CDS: 0.79 Total: -13.94 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -1.12 Total: -17.86 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.03 Total: -2.98 kcal Atomic # 14 Polarization: 16.56 SS G_CDS: -5.04 Total: 11.52 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -28.36 -6.03 -34.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307272947.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.847 kcal (2) G-P(sol) polarization free energy of solvation -28.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds