Wall clock time and date at job start Mon Mar 30 2020 02:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38481 * 119.65784 * 2 1 4 4 C 1.38010 * 120.13157 * 179.97438 * 3 2 1 5 5 F 1.35098 * 120.26667 * 180.02562 * 4 3 2 6 6 C 1.41724 * 119.46182 * 0.02562 * 4 3 2 7 7 C 1.40015 * 120.32648 * 179.97438 * 6 4 3 8 8 H 1.08002 * 119.99700 * 221.32037 * 7 6 4 9 9 C 1.46610 * 119.99996 * 41.31400 * 7 6 4 10 10 N 1.29471 * 120.00044 * 11.89449 * 9 7 6 11 11 Si 1.86808 * 119.99820 * 191.89295 * 9 7 6 12 12 H 1.48494 * 109.46954 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46968 * 120.00231 * 11 9 7 14 14 H 1.48499 * 109.46601 * 240.00167 * 11 9 7 15 15 C 1.41359 * 119.34273 * 359.97438 * 6 4 3 16 16 N 1.48016 * 120.07490 * 179.72281 * 15 6 4 17 17 O 1.31694 * 119.99989 * 186.15670 * 16 15 6 18 18 O 1.31699 * 120.00018 * 6.15732 * 16 15 6 19 19 C 1.36273 * 119.84458 * 0.02562 * 15 6 4 20 20 H 1.09004 * 109.46913 * 90.00175 * 1 2 3 21 21 H 1.09000 * 109.46652 * 209.99800 * 1 2 3 22 22 H 1.08994 * 109.46872 * 330.00189 * 1 2 3 23 23 H 1.08003 * 119.93429 * 359.97438 * 3 2 1 24 24 H 0.97005 * 120.00063 * 179.97438 * 10 9 7 25 25 H 1.08003 * 119.72650 * 179.97438 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1923 1.2034 0.0000 4 6 3.5723 1.2148 0.0005 5 9 4.2436 2.3872 0.0011 6 6 4.2796 -0.0134 0.0005 7 6 5.6797 -0.0229 0.0005 8 1 6.2148 -0.7290 -0.6171 9 6 6.4192 0.9257 0.8387 10 7 5.7974 1.6106 1.7446 11 14 8.2588 1.1463 0.5997 12 1 8.7265 0.2546 -0.4917 13 1 8.5456 2.5586 0.2416 14 1 8.9663 0.8014 1.8590 15 6 3.5574 -1.2286 0.0005 16 7 4.2796 -2.5206 -0.0057 17 8 3.6106 -3.6483 -0.1280 18 8 5.5912 -2.5424 0.1111 19 6 2.1948 -1.2077 0.0000 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3632 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6456 2.1349 -0.0004 24 1 6.2868 2.2379 2.2995 25 1 1.6450 -2.1373 -0.0004 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307272947.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:37 Heat of formation + Delta-G solvation = -34.825273 kcal Electronic energy + Delta-G solvation = -15275.060093 eV Core-core repulsion = 12364.165734 eV Total energy + Delta-G solvation = -2910.894359 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.45489 -40.32761 -38.31424 -36.40174 -34.60229 -33.58460 -31.70564 -29.75282 -27.28597 -25.67360 -23.08837 -22.21120 -20.23101 -18.55742 -18.46236 -17.60022 -16.76487 -16.67324 -16.45293 -16.24066 -15.91277 -14.64419 -14.23393 -14.20002 -13.96752 -13.61780 -13.24982 -12.84577 -12.61026 -12.48674 -12.33888 -11.98845 -11.56718 -11.44435 -11.25934 -11.14626 -10.00233 -9.67353 -9.38186 -6.99312 -1.17666 0.44935 0.70592 1.12955 1.26992 1.36055 1.48470 2.03212 2.16391 2.77795 3.50134 3.95644 4.13147 4.25925 4.32709 4.42907 4.73190 4.89957 4.98125 5.04110 5.05765 5.35151 5.48175 5.56527 5.71824 5.80250 5.86899 6.24733 6.69079 7.49311 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.025476 B = 0.013110 C = 0.009007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.796708 B = 2135.327893 C = 3108.050881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.129 4.129 3 C -0.108 4.108 4 C 0.070 3.930 5 F -0.131 7.131 6 C 0.016 3.984 7 C -0.293 4.293 8 H 0.113 0.887 9 C 0.016 3.984 10 N -0.705 5.705 11 Si 1.006 2.994 12 H -0.255 1.255 13 H -0.236 1.236 14 H -0.250 1.250 15 C -0.075 4.075 16 N 0.030 4.970 17 O -0.412 6.412 18 O -0.341 6.341 19 C -0.076 4.076 20 H 0.080 0.920 21 H 0.067 0.933 22 H 0.086 0.914 23 H 0.164 0.836 24 H 0.328 0.672 25 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 9.385 -0.355 9.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.127 4.127 4 C 0.049 3.951 5 F -0.109 7.109 6 C 0.010 3.990 7 C -0.322 4.322 8 H 0.131 0.869 9 C -0.216 4.216 10 N -0.326 5.326 11 Si 0.821 3.179 12 H -0.178 1.178 13 H -0.159 1.159 14 H -0.173 1.173 15 C -0.182 4.182 16 N 0.425 4.575 17 O -0.540 6.540 18 O -0.485 6.485 19 C -0.095 4.095 20 H 0.099 0.901 21 H 0.086 0.914 22 H 0.104 0.896 23 H 0.181 0.819 24 H 0.142 0.858 25 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.167 9.505 -0.168 10.020 hybrid contribution 1.082 -0.585 0.079 1.233 sum -2.085 8.920 -0.089 9.161 Atomic orbital electron populations 1.20647 0.87230 1.03644 1.03182 1.19627 0.97782 0.89463 1.06484 1.21195 0.90931 1.00091 1.00519 1.17882 0.89934 0.79913 1.07366 1.91385 1.81263 1.44445 1.93853 1.17478 0.94653 0.89415 0.97438 1.22515 0.91685 1.08056 1.09917 0.86893 1.28821 1.08437 0.91511 0.92803 1.68923 1.43889 1.11002 1.08801 0.84788 0.71290 0.80792 0.81059 1.17781 1.15918 1.17344 1.19953 0.91918 0.80005 1.26323 1.49730 1.01851 1.03531 1.02383 1.95998 1.68027 1.20369 1.69590 1.95989 0.91819 1.96215 1.64480 1.20291 0.90456 0.99853 0.98922 0.90125 0.91381 0.89568 0.81891 0.85773 0.85508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.19 10.00 71.24 0.71 -1.48 15 2 C -0.13 -4.58 5.91 -19.63 -0.12 -4.70 15 3 C -0.11 -3.86 9.65 22.27 0.21 -3.65 15 4 C 0.07 3.06 6.72 23.08 0.16 3.21 15 5 F -0.13 -5.59 14.48 44.97 0.65 -4.94 15 6 C 0.02 0.79 5.41 -21.22 -0.11 0.68 15 7 C -0.29 -14.65 7.48 24.89 0.19 -14.46 15 8 H 0.11 5.95 6.29 -2.91 -0.02 5.93 15 9 C 0.02 0.67 4.91 87.23 0.43 1.10 15 10 N -0.70 -29.78 11.13 23.23 0.26 -29.52 15 11 Si 1.01 32.00 29.66 68.60 2.03 34.04 15 12 H -0.25 -8.54 7.11 99.48 0.71 -7.83 15 13 H -0.24 -6.58 7.11 99.48 0.71 -5.88 15 14 H -0.25 -7.54 7.11 99.48 0.71 -6.84 15 15 C -0.08 -3.96 6.89 36.69 0.25 -3.70 15 16 N 0.03 1.80 4.98 -45.73 -0.23 1.58 15 17 O -0.41 -25.34 19.14 3.53 0.07 -25.27 15 18 O -0.34 -21.08 16.39 3.52 0.06 -21.02 15 19 C -0.08 -3.37 9.15 21.99 0.20 -3.17 15 20 H 0.08 1.69 8.14 -2.38 -0.02 1.67 15 21 H 0.07 1.58 8.08 -2.39 -0.02 1.56 15 22 H 0.09 1.67 8.08 -2.39 -0.02 1.65 15 23 H 0.16 4.46 8.06 -2.91 -0.02 4.44 15 24 H 0.33 11.57 8.27 -92.70 -0.77 10.80 15 25 H 0.13 5.49 7.54 -2.91 -0.02 5.47 15 Total: -1.00 -66.31 237.68 5.99 -60.32 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.23 Total: 10.98 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 1.92 Total: -26.17 kcal Atomic # 7 Polarization: -27.97 SS G_CDS: 0.03 Total: -27.94 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: 0.13 Total: -46.29 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.65 Total: -4.94 kcal Atomic # 14 Polarization: 32.00 SS G_CDS: 2.03 Total: 34.04 kcal Total: -66.31 5.99 -60.32 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307272947.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.495 kcal (2) G-P(sol) polarization free energy of solvation -66.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds