Wall clock time and date at job start Mon Mar 30 2020 02:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36278 * 119.87409 * 2 1 4 4 C 1.41419 * 119.73335 * 179.97438 * 3 2 1 5 5 C 1.40030 * 120.25646 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00191 * 335.68420 * 5 4 3 7 7 C 1.46587 * 120.00594 * 155.68329 * 5 4 3 8 8 N 1.29494 * 119.99394 * 344.33394 * 7 5 4 9 9 Si 1.86795 * 120.00232 * 164.32578 * 7 5 4 10 10 H 1.48505 * 109.46910 * 90.00567 * 9 7 5 11 11 H 1.48496 * 109.47101 * 210.00262 * 9 7 5 12 12 H 1.48496 * 109.47222 * 330.00356 * 9 7 5 13 13 C 1.41464 * 119.49120 * 359.97438 * 4 3 2 14 14 C 1.36244 * 119.72717 * 0.06701 * 13 4 3 15 15 N 1.48012 * 119.86690 * 179.97438 * 14 13 4 16 16 O 1.31702 * 120.00125 * 359.97438 * 15 14 13 17 17 O 1.31700 * 119.99781 * 179.97438 * 15 14 13 18 18 C 1.39253 * 119.86445 * 180.02562 * 2 1 3 19 19 F 1.35093 * 119.73960 * 0.02562 * 18 2 1 20 20 H 1.09002 * 109.47249 * 89.99985 * 1 2 3 21 21 H 1.08999 * 109.47448 * 210.00236 * 1 2 3 22 22 H 1.09002 * 109.46910 * 330.00155 * 1 2 3 23 23 H 1.08003 * 120.13048 * 359.72403 * 3 2 1 24 24 H 0.96999 * 119.99408 * 180.02562 * 8 7 5 25 25 H 1.07998 * 120.13300 * 179.97438 * 13 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.1817 0.0000 4 6 3.5999 1.1782 0.0005 5 6 4.3085 2.3860 0.0011 6 1 3.8467 3.2832 -0.3840 7 6 5.6770 2.4329 0.5244 8 7 6.1249 1.4610 1.2535 9 14 6.7747 3.8943 0.1392 10 1 6.6035 4.9319 1.1877 11 1 8.1923 3.4534 0.1060 12 1 6.4010 4.4595 -1.1822 13 6 4.2933 -0.0548 0.0016 14 6 3.5932 -1.2236 0.0008 15 7 4.3155 -2.5155 0.0013 16 8 5.6324 -2.5337 0.0022 17 8 3.6413 -3.6469 0.0010 18 6 2.2004 -1.2076 -0.0005 19 9 1.5168 -2.3729 -0.0016 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.6458 2.1171 -0.0045 24 1 7.0303 1.4922 1.6001 25 1 5.3732 -0.0696 0.0017 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307295394.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:50 Heat of formation + Delta-G solvation = -21.300082 kcal Electronic energy + Delta-G solvation = -15054.549113 eV Core-core repulsion = 12144.241250 eV Total energy + Delta-G solvation = -2910.307863 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.78351 -38.72401 -37.32482 -34.34601 -33.47728 -32.11948 -30.65195 -26.61996 -25.61324 -25.25572 -21.09332 -20.87064 -18.13290 -17.13844 -16.89322 -16.22450 -15.72711 -15.31652 -14.96589 -14.34803 -13.60885 -12.99501 -12.83573 -12.48489 -12.40324 -12.05607 -11.64032 -11.35381 -11.22576 -10.79490 -10.76300 -10.47863 -10.38760 -9.99199 -9.85331 -9.73300 -8.48401 -7.92017 -7.46156 -4.89533 0.33364 2.12792 2.14380 2.34873 2.73557 2.77799 2.82192 3.46759 3.86329 4.82345 5.09604 5.39935 5.71257 6.00385 6.01721 6.05270 6.25785 6.26868 6.29443 6.46920 6.85800 6.97681 7.09760 7.33238 7.45567 7.72785 7.83331 8.04038 8.20589 9.42603 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.028631 B = 0.010279 C = 0.007730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.739183 B = 2723.275127 C = 3621.553533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.067 4.067 3 C -0.186 4.186 4 C 0.094 3.906 5 C -0.428 4.428 6 H 0.099 0.901 7 C 0.066 3.934 8 N -0.739 5.739 9 Si 0.929 3.071 10 H -0.261 1.261 11 H -0.268 1.268 12 H -0.252 1.252 13 C -0.102 4.102 14 C 0.015 3.985 15 N -0.005 5.005 16 O -0.200 6.200 17 O -0.195 6.195 18 C -0.027 4.027 19 F -0.140 7.140 20 H 0.066 0.934 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.119 0.881 24 H 0.302 0.698 25 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.603 4.574 -1.108 5.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.069 4.069 3 C -0.206 4.206 4 C 0.091 3.909 5 C -0.453 4.453 6 H 0.117 0.883 7 C -0.164 4.164 8 N -0.358 5.358 9 Si 0.750 3.250 10 H -0.186 1.186 11 H -0.192 1.192 12 H -0.175 1.175 13 C -0.123 4.123 14 C -0.073 4.073 15 N 0.470 4.530 16 O -0.390 6.390 17 O -0.387 6.387 18 C -0.049 4.049 19 F -0.119 7.119 20 H 0.084 0.916 21 H 0.081 0.919 22 H 0.085 0.915 23 H 0.137 0.863 24 H 0.115 0.885 25 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.711 4.958 -0.951 5.730 hybrid contribution 0.740 -0.142 0.025 0.754 sum -1.971 4.816 -0.926 5.285 Atomic orbital electron populations 1.20626 0.91189 1.02381 1.01934 1.19089 0.95522 0.91019 1.01223 1.20812 0.93688 0.95883 1.10218 1.17415 0.90991 0.91846 0.90687 1.20871 0.95850 0.95715 1.32822 0.88260 1.27710 0.98637 0.98144 0.91862 1.69020 1.18432 1.30672 1.17677 0.85954 0.78350 0.79776 0.80892 1.18597 1.19249 1.17513 1.21254 1.01963 0.88631 1.00475 1.20178 0.89902 0.81039 1.16133 1.50641 1.02817 1.04696 0.94895 1.96196 0.89688 1.96328 1.56798 1.96212 1.67227 1.18887 1.56372 1.16650 0.85849 0.81984 1.20377 1.91402 1.79379 1.46097 1.95002 0.91569 0.91866 0.91497 0.86287 0.88470 0.82710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 9.82 36.00 0.35 -1.33 15 2 C -0.07 -1.38 5.85 -104.95 -0.61 -2.00 15 3 C -0.19 -3.89 9.39 -39.08 -0.37 -4.26 15 4 C 0.09 2.19 5.62 -106.79 -0.60 1.59 15 5 C -0.43 -9.43 9.30 -35.55 -0.33 -9.76 15 6 H 0.10 2.00 7.98 -52.49 -0.42 1.58 15 7 C 0.07 1.38 5.35 -15.17 -0.08 1.30 15 8 N -0.74 -16.49 10.95 55.99 0.61 -15.87 15 9 Si 0.93 15.42 29.67 -169.99 -5.04 10.38 15 10 H -0.26 -4.26 7.11 56.52 0.40 -3.86 15 11 H -0.27 -4.42 7.11 56.52 0.40 -4.02 15 12 H -0.25 -4.14 7.11 56.52 0.40 -3.74 15 13 C -0.10 -2.53 8.25 -39.07 -0.32 -2.85 15 14 C 0.01 0.37 6.85 -80.28 -0.55 -0.18 15 15 N 0.00 -0.12 4.98 33.80 0.17 0.05 15 16 O -0.20 -5.15 19.11 -31.57 -0.60 -5.75 15 17 O -0.20 -5.03 18.06 -31.57 -0.57 -5.60 15 18 C -0.03 -0.63 7.25 -38.81 -0.28 -0.91 15 19 F -0.14 -3.29 14.56 2.25 0.03 -3.25 15 20 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 21 H 0.06 1.00 7.63 -51.93 -0.40 0.61 15 22 H 0.07 0.93 8.08 -51.93 -0.42 0.51 15 23 H 0.12 2.17 8.06 -52.48 -0.42 1.74 15 24 H 0.30 6.02 8.27 -40.82 -0.34 5.68 15 25 H 0.16 3.95 5.57 -52.49 -0.29 3.66 15 LS Contribution 240.05 15.07 3.62 3.62 Total: -1.00 -26.03 240.05 -6.08 -32.11 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -1.51 Total: 2.69 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -2.79 Total: -18.38 kcal Atomic # 7 Polarization: -16.60 SS G_CDS: 0.78 Total: -15.82 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -1.17 Total: -11.35 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.03 Total: -3.25 kcal Atomic # 14 Polarization: 15.42 SS G_CDS: -5.04 Total: 10.38 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -26.03 -6.08 -32.11 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307295394.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.813 kcal (2) G-P(sol) polarization free energy of solvation -26.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds