Wall clock time and date at job start Mon Mar 30 2020 03:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99762 * 2 1 4 4 H 1.48498 * 109.47392 * 270.00174 * 3 2 1 5 5 H 1.48502 * 109.47486 * 30.00559 * 3 2 1 6 6 H 1.48510 * 109.46900 * 150.00439 * 3 2 1 7 7 C 1.37878 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99547 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00415 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47164 * 180.02562 * 9 7 2 11 11 C 1.38122 * 119.96476 * 270.02523 * 10 9 7 12 12 C 1.38889 * 119.92369 * 179.97438 * 11 10 9 13 13 N 1.39685 * 120.07180 * 179.97438 * 12 11 10 14 14 C 1.38930 * 119.85579 * 359.97438 * 12 11 10 15 15 C 1.38085 * 119.92033 * 0.02562 * 14 12 11 16 16 C 1.50703 * 119.96205 * 180.02562 * 15 14 12 17 17 Cl 1.80294 * 109.46973 * 269.97705 * 16 15 14 18 18 C 1.38265 * 119.95949 * 90.00284 * 10 9 7 19 19 H 0.97000 * 120.00072 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46893 * 60.00231 * 9 7 2 21 21 H 1.09005 * 109.47136 * 300.00855 * 9 7 2 22 22 H 1.08001 * 120.03918 * 359.95124 * 11 10 9 23 23 H 0.96992 * 119.99904 * 359.97438 * 13 12 11 24 24 H 0.97001 * 119.99806 * 179.97438 * 13 12 11 25 25 H 1.07996 * 120.04145 * 180.02562 * 14 12 11 26 26 H 1.09003 * 109.46889 * 29.97837 * 16 15 14 27 27 H 1.08992 * 109.47000 * 149.97729 * 16 15 14 28 28 H 1.07998 * 119.92765 * 359.74173 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6790 -4.1686 -1.1971 12 6 3.5820 -5.2239 -1.1961 13 7 4.0374 -5.7566 -2.4045 14 6 4.0313 -5.7486 0.0093 15 6 3.5786 -5.2200 1.2019 16 6 4.0658 -5.7880 2.5100 17 17 2.9690 -7.1202 3.0324 18 6 2.6790 -4.1694 1.1974 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 2.3279 -3.7585 -2.1325 23 1 3.7228 -5.3897 -3.2454 24 1 4.6683 -6.4934 -2.4025 25 1 4.7337 -6.5689 0.0136 26 1 5.0759 -6.1776 2.3832 27 1 4.0712 -5.0039 3.2670 28 1 2.3301 -3.7549 2.1316 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307384373.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:22 Heat of formation + Delta-G solvation = -7.589623 kcal Electronic energy + Delta-G solvation = -12743.629805 eV Core-core repulsion = 10398.085941 eV Total energy + Delta-G solvation = -2345.543863 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.99174 -35.83682 -34.53000 -33.41369 -31.75945 -28.88635 -26.98078 -26.20362 -23.32517 -20.94531 -19.94711 -16.49781 -16.33621 -15.92452 -15.32333 -14.52263 -14.23617 -14.20168 -13.40300 -12.83881 -12.62892 -12.44240 -11.98565 -11.29098 -11.18169 -10.99717 -10.63654 -10.50060 -10.21870 -10.18994 -10.04558 -9.47560 -9.33835 -8.41721 -7.89834 -7.03162 -6.03585 -4.07183 1.66943 2.27933 2.83291 3.30378 3.36783 3.40889 4.19483 4.40089 4.60566 4.94983 5.07162 5.31429 5.50207 5.56932 5.93222 6.01795 6.23800 6.38472 6.69968 6.85791 7.11145 7.20732 7.44196 7.57879 7.86412 7.92436 7.96947 8.08553 8.32863 8.98068 9.56354 11.06443 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.027660 B = 0.007099 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.031998 B = 3943.094153 C = 4514.082571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.046 3.954 10 C 0.009 3.991 11 C -0.186 4.186 12 C 0.206 3.794 13 N -0.886 5.886 14 C -0.203 4.203 15 C -0.072 4.072 16 C 0.019 3.981 17 Cl -0.190 7.190 18 C -0.152 4.152 19 H 0.262 0.738 20 H 0.029 0.971 21 H 0.031 0.969 22 H 0.117 0.883 23 H 0.395 0.605 24 H 0.391 0.609 25 H 0.109 0.891 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.165 -11.359 0.451 13.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.075 0.925 9 C 0.010 3.990 10 C 0.008 3.992 11 C -0.209 4.209 12 C 0.103 3.897 13 N -0.426 5.426 14 C -0.226 4.226 15 C -0.073 4.073 16 C -0.043 4.043 17 Cl -0.164 7.164 18 C -0.172 4.172 19 H 0.071 0.929 20 H 0.047 0.953 21 H 0.049 0.951 22 H 0.135 0.865 23 H 0.222 0.778 24 H 0.218 0.782 25 H 0.127 0.873 26 H 0.112 0.888 27 H 0.118 0.882 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.913 -11.316 0.559 13.819 hybrid contribution 0.560 0.773 -0.382 1.028 sum 8.473 -10.543 0.176 13.527 Atomic orbital electron populations 1.69961 1.06023 1.26792 1.50536 1.25007 0.94870 0.99216 0.95237 0.86543 0.79851 0.83213 0.78130 1.20658 1.21168 1.19795 1.21038 0.93038 0.89796 1.50923 0.92451 1.18377 0.92608 0.89588 0.98458 1.20402 0.94125 0.93495 0.91165 1.20596 1.02378 0.98955 0.98960 1.17694 0.93201 0.92785 0.85973 1.42357 1.53545 1.41428 1.05236 1.20073 1.07256 1.04510 0.90790 1.19281 0.98569 0.96834 0.92569 1.23145 0.94008 0.90826 0.96355 1.98713 1.70406 1.55273 1.92012 1.20736 1.00076 0.97903 0.98509 0.92851 0.95316 0.95123 0.86519 0.77756 0.78201 0.87283 0.88793 0.88239 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.65 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 15 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 15 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.51 -14.22 9.09 -34.44 -0.31 -14.54 15 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 15 9 C 0.05 1.20 5.10 -29.04 -0.15 1.05 15 10 C 0.01 0.19 5.07 -104.66 -0.53 -0.34 15 11 C -0.19 -3.65 9.55 -39.38 -0.38 -4.02 15 12 C 0.21 3.41 6.75 -83.78 -0.57 2.84 15 13 N -0.89 -11.02 9.09 32.41 0.29 -10.72 15 14 C -0.20 -3.21 9.55 -39.38 -0.38 -3.59 15 15 C -0.07 -1.18 5.26 -104.65 -0.55 -1.73 15 16 C 0.02 0.25 6.78 36.01 0.24 0.49 15 17 Cl -0.19 -2.67 29.13 -51.86 -1.51 -4.18 15 18 C -0.15 -2.98 9.35 -39.54 -0.37 -3.35 15 19 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 20 H 0.03 0.77 8.09 -51.93 -0.42 0.36 15 21 H 0.03 0.83 8.08 -51.93 -0.42 0.41 15 22 H 0.12 2.24 8.06 -52.49 -0.42 1.82 15 23 H 0.39 4.37 8.84 -40.82 -0.36 4.01 15 24 H 0.39 3.88 8.84 -40.82 -0.36 3.52 15 25 H 0.11 1.45 8.06 -52.49 -0.42 1.03 15 26 H 0.09 1.01 8.08 -51.93 -0.42 0.59 15 27 H 0.10 1.20 8.08 -51.93 -0.42 0.78 15 28 H 0.12 2.27 8.06 -52.49 -0.42 1.85 15 LS Contribution 264.56 15.07 3.99 3.99 Total: -1.00 -30.14 264.56 -7.81 -37.94 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -3.21 Total: 3.82 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -3.08 Total: -21.64 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 1.03 Total: -36.37 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -2.67 SS G_CDS: -1.51 Total: -4.18 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.14 -7.81 -37.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307384373.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.352 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds