Wall clock time and date at job start Mon Mar 30 2020 02:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00253 * 2 1 4 4 H 1.48491 * 109.47314 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46956 * 300.00280 * 3 2 1 6 6 H 1.48495 * 109.46993 * 59.99904 * 3 2 1 7 7 C 1.37881 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99871 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00107 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.33013 * 57.74569 * 9 7 2 11 11 C 1.54476 * 110.37446 * 179.97438 * 9 7 2 12 12 C 1.54505 * 104.06513 * 142.91943 * 11 9 7 13 13 C 1.54479 * 104.06022 * 0.02562 * 12 11 9 14 14 H 1.08996 * 110.37640 * 94.96419 * 13 12 11 15 15 C 1.50705 * 110.37361 * 217.18721 * 13 12 11 16 16 C 1.33642 * 122.74773 * 124.99417 * 15 13 12 17 17 S 1.76198 * 107.92248 * 179.97438 * 16 15 13 18 18 C 1.70978 * 90.28297 * 0.02562 * 17 16 15 19 19 N 1.29024 * 110.16811 * 359.97438 * 18 17 16 20 20 O 1.44424 * 104.80808 * 336.01978 * 13 12 11 21 21 H 0.97001 * 120.00388 * 359.97438 * 1 2 3 22 22 H 1.09002 * 110.50987 * 24.27555 * 11 9 7 23 23 H 1.08994 * 110.51249 * 261.56588 * 11 9 7 24 24 H 1.08998 * 110.51450 * 241.36300 * 12 11 9 25 25 H 1.09000 * 110.51594 * 118.64233 * 12 11 9 26 26 H 1.07997 * 126.03754 * 359.97438 * 16 15 13 27 27 H 1.07998 * 124.91280 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5889 -2.5542 -0.8647 11 6 2.2362 -3.6890 -0.0018 12 6 1.5554 -4.7412 0.9019 13 6 0.2391 -4.0628 1.3417 14 1 -0.5786 -4.3593 0.6848 15 6 -0.0822 -4.4180 2.7706 16 6 -0.2964 -3.4961 3.7141 17 16 -0.6362 -4.3357 5.2255 18 6 -0.4558 -5.8429 4.4385 19 7 -0.1752 -5.6632 3.1921 20 8 0.4955 -2.6466 1.2212 21 1 -0.4851 0.8400 0.0004 22 1 3.1969 -3.3898 0.4173 23 1 2.3637 -4.0782 -1.0119 24 1 2.1794 -4.9621 1.7678 25 1 1.3462 -5.6506 0.3386 26 1 -0.2664 -2.4256 3.5748 27 1 -0.5615 -6.8059 4.9158 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307400578.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:21 Heat of formation + Delta-G solvation = -1.547188 kcal Electronic energy + Delta-G solvation = -13303.281216 eV Core-core repulsion = 10960.043079 eV Total energy + Delta-G solvation = -2343.238137 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.68971 -37.65415 -32.72236 -30.91739 -30.60688 -28.02806 -25.50000 -23.97180 -21.63375 -20.07957 -19.09126 -17.68871 -16.55162 -15.55088 -15.30579 -14.58734 -14.12154 -13.87651 -13.57363 -12.84307 -12.61066 -12.39625 -11.84280 -11.53435 -10.96827 -10.68397 -10.50519 -10.31177 -10.04080 -9.75164 -9.42675 -9.17361 -9.14426 -8.70945 -8.46717 -8.13404 -6.06440 -4.18996 1.05816 1.67593 2.01024 3.13075 3.27517 3.35625 3.39615 4.28871 4.39325 5.04172 5.35279 5.49609 5.69640 5.72422 5.84676 6.00035 6.27549 6.35513 6.41995 6.54426 6.67773 6.82264 6.83387 7.46924 7.84775 8.00498 8.17137 8.47114 8.92242 9.51918 11.01470 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.037291 B = 0.007941 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.679259 B = 3525.290611 C = 4015.791992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.076 3.924 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.065 0.935 9 C 0.206 3.794 10 H 0.030 0.970 11 C -0.148 4.148 12 C -0.133 4.133 13 C 0.139 3.861 14 H 0.068 0.932 15 C 0.067 3.933 16 C -0.208 4.208 17 S 0.080 5.920 18 C 0.010 3.990 19 N -0.461 5.461 20 O -0.348 6.348 21 H 0.261 0.739 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.188 0.812 27 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.959 -8.643 7.559 11.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.130 4.130 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.083 0.917 9 C 0.151 3.849 10 H 0.048 0.952 11 C -0.186 4.186 12 C -0.172 4.172 13 C 0.077 3.923 14 H 0.086 0.914 15 C -0.062 4.062 16 C -0.346 4.346 17 S 0.331 5.669 18 C -0.289 4.289 19 N -0.175 5.175 20 O -0.267 6.267 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.205 0.795 27 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.336 -8.540 8.376 12.036 hybrid contribution 0.609 0.867 -0.829 1.345 sum -0.727 -7.674 7.547 10.787 Atomic orbital electron populations 1.70038 1.06059 1.26622 1.47404 1.25101 0.94806 0.99408 0.93635 0.86533 0.80264 0.83500 0.77673 1.19566 1.20843 1.20826 1.21087 0.92759 0.89632 1.52939 0.91663 1.20567 0.87698 0.92614 0.84028 0.95199 1.23066 1.00838 0.96601 0.98069 1.22777 0.96485 0.98368 0.99535 1.21006 0.96561 0.87235 0.87480 0.91420 1.20258 1.01597 0.86179 0.98205 1.27007 1.08515 1.06021 0.93053 1.83847 1.66373 1.01557 1.15167 1.28227 1.05273 1.02552 0.92837 1.65975 1.14759 1.23056 1.13734 1.89454 1.75304 1.16343 1.45602 0.92889 0.91707 0.92454 0.92087 0.91779 0.79485 0.78801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.39 13.07 55.43 0.72 -24.67 15 2 C 0.08 2.14 5.43 -17.82 -0.10 2.04 15 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 15 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 7 C -0.53 -14.73 8.78 -34.44 -0.30 -15.03 15 8 H 0.07 1.78 7.57 -52.49 -0.40 1.38 15 9 C 0.21 5.33 3.05 -27.11 -0.08 5.25 15 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 11 C -0.15 -3.15 6.62 -25.17 -0.17 -3.32 15 12 C -0.13 -2.60 6.55 -25.17 -0.16 -2.76 15 13 C 0.14 2.97 3.83 -27.10 -0.10 2.86 15 14 H 0.07 1.43 8.14 -51.93 -0.42 1.01 15 15 C 0.07 1.31 5.94 -84.22 -0.50 0.81 15 16 C -0.21 -3.79 10.60 29.12 0.31 -3.48 15 17 S 0.08 1.08 23.22 -107.50 -2.50 -1.42 15 18 C 0.01 0.13 12.23 51.58 0.63 0.76 15 19 N -0.46 -7.98 10.43 -11.89 -0.12 -8.10 15 20 O -0.35 -8.97 9.78 -35.23 -0.34 -9.31 15 21 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 22 H 0.06 1.38 7.71 -51.93 -0.40 0.98 15 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 24 H 0.06 1.18 7.87 -51.93 -0.41 0.77 15 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 26 H 0.19 3.68 7.65 -52.49 -0.40 3.28 15 27 H 0.20 1.80 8.06 -52.49 -0.42 1.38 15 LS Contribution 250.12 15.07 3.77 3.77 Total: -1.00 -30.51 250.12 -6.83 -37.34 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -2.86 Total: -0.93 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -0.48 Total: -12.86 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.60 Total: -32.77 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.34 Total: -9.31 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.50 Total: -1.42 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.51 -6.83 -37.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307400578.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.794 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds