Wall clock time and date at job start Mon Mar 30 2020 02:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00253 * 2 1 4 4 H 1.48491 * 109.47314 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46956 * 300.00280 * 3 2 1 6 6 H 1.48495 * 109.46993 * 59.99904 * 3 2 1 7 7 C 1.37881 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99871 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00107 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.33013 * 57.74569 * 9 7 2 11 11 C 1.54476 * 110.37446 * 179.97438 * 9 7 2 12 12 C 1.54505 * 104.06513 * 142.91943 * 11 9 7 13 13 C 1.54479 * 104.06022 * 0.02562 * 12 11 9 14 14 H 1.08996 * 110.37640 * 94.96419 * 13 12 11 15 15 C 1.50705 * 110.37361 * 217.18721 * 13 12 11 16 16 C 1.33642 * 122.74773 * 124.99417 * 15 13 12 17 17 S 1.76198 * 107.92248 * 179.97438 * 16 15 13 18 18 C 1.70978 * 90.28297 * 0.02562 * 17 16 15 19 19 N 1.29024 * 110.16811 * 359.97438 * 18 17 16 20 20 O 1.44424 * 104.80808 * 336.01978 * 13 12 11 21 21 H 0.97001 * 120.00388 * 359.97438 * 1 2 3 22 22 H 1.09002 * 110.50987 * 24.27555 * 11 9 7 23 23 H 1.08994 * 110.51249 * 261.56588 * 11 9 7 24 24 H 1.08998 * 110.51450 * 241.36300 * 12 11 9 25 25 H 1.09000 * 110.51594 * 118.64233 * 12 11 9 26 26 H 1.07997 * 126.03754 * 359.97438 * 16 15 13 27 27 H 1.07998 * 124.91280 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5889 -2.5542 -0.8647 11 6 2.2362 -3.6890 -0.0018 12 6 1.5554 -4.7412 0.9019 13 6 0.2391 -4.0628 1.3417 14 1 -0.5786 -4.3593 0.6848 15 6 -0.0822 -4.4180 2.7706 16 6 -0.2964 -3.4961 3.7141 17 16 -0.6362 -4.3357 5.2255 18 6 -0.4558 -5.8429 4.4385 19 7 -0.1752 -5.6632 3.1921 20 8 0.4955 -2.6466 1.2212 21 1 -0.4851 0.8400 0.0004 22 1 3.1969 -3.3898 0.4173 23 1 2.3637 -4.0782 -1.0119 24 1 2.1794 -4.9621 1.7678 25 1 1.3462 -5.6506 0.3386 26 1 -0.2664 -2.4256 3.5748 27 1 -0.5615 -6.8059 4.9158 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307400578.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:20 Heat of formation + Delta-G solvation = -22.160726 kcal Electronic energy + Delta-G solvation = -13304.175086 eV Core-core repulsion = 10960.043079 eV Total energy + Delta-G solvation = -2344.132007 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.09596 -39.36076 -34.79852 -32.69703 -32.12641 -29.76121 -27.16551 -25.51929 -23.35106 -21.86814 -20.46696 -19.21053 -18.38850 -17.14050 -16.82706 -16.50245 -15.87268 -15.42420 -15.06188 -14.36318 -14.23233 -14.02294 -13.64422 -13.11373 -12.84551 -12.45538 -12.26639 -11.99702 -11.91837 -11.44998 -11.09691 -10.77493 -10.64332 -10.39601 -10.20948 -9.68316 -8.19334 -6.40013 -0.16747 0.48569 0.79473 1.40029 1.41042 1.54022 1.80154 2.39032 2.83039 3.22570 3.78076 3.95390 4.08193 4.15758 4.43180 4.53564 4.62448 4.70096 4.77901 4.98929 5.06193 5.15124 5.20001 5.47762 5.71008 6.11344 6.47155 6.75036 6.85936 7.35709 8.89622 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.037291 B = 0.007941 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.679259 B = 3525.290611 C = 4015.791992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.549 4.549 8 H 0.067 0.933 9 C 0.197 3.803 10 H -0.001 1.001 11 C -0.139 4.139 12 C -0.119 4.119 13 C 0.130 3.870 14 H 0.060 0.940 15 C 0.055 3.945 16 C -0.252 4.252 17 S 0.163 5.837 18 C 0.025 3.975 19 N -0.489 5.489 20 O -0.376 6.376 21 H 0.263 0.737 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.160 0.840 27 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 -9.871 9.133 13.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.206 1.206 7 C -0.586 4.586 8 H 0.085 0.915 9 C 0.141 3.859 10 H 0.017 0.983 11 C -0.177 4.177 12 C -0.157 4.157 13 C 0.068 3.932 14 H 0.077 0.923 15 C -0.076 4.076 16 C -0.391 4.391 17 S 0.415 5.585 18 C -0.273 4.273 19 N -0.204 5.204 20 O -0.295 6.295 21 H 0.072 0.928 22 H 0.081 0.919 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.108 0.892 26 H 0.177 0.823 27 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -0.691 -9.779 9.963 13.977 hybrid contribution 0.331 1.155 -1.210 1.705 sum -0.361 -8.623 8.753 12.293 Atomic orbital electron populations 1.70173 1.07758 1.27600 1.48606 1.25985 0.95643 1.03211 0.93080 0.85423 0.79193 0.78709 0.77799 1.18529 1.19979 1.20593 1.21482 0.93135 0.91049 1.52984 0.91463 1.20485 0.88126 0.94028 0.83247 0.98324 1.22949 0.99527 0.95388 0.99813 1.22686 0.95115 0.98435 0.99440 1.21110 0.97331 0.85150 0.89583 0.92255 1.20004 1.02768 0.87558 0.97263 1.26924 1.10377 1.05230 0.96549 1.83511 1.64438 0.99579 1.10929 1.29100 1.01668 1.04688 0.91799 1.65988 1.17079 1.21728 1.15621 1.89374 1.75585 1.19514 1.45070 0.92784 0.91880 0.90408 0.91688 0.89243 0.82255 0.74013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.92 13.07 21.45 0.28 -54.64 15 2 C 0.02 1.31 5.43 84.66 0.46 1.77 15 3 Si 0.96 44.15 29.54 68.60 2.03 46.18 15 4 H -0.26 -11.42 7.11 99.48 0.71 -10.72 15 5 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 7 C -0.55 -31.50 8.78 25.60 0.22 -31.27 15 8 H 0.07 3.71 7.57 -2.91 -0.02 3.69 15 9 C 0.20 10.55 3.05 30.35 0.09 10.65 15 10 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 15 11 C -0.14 -5.92 6.62 31.61 0.21 -5.71 15 12 C -0.12 -4.55 6.55 31.61 0.21 -4.34 15 13 C 0.13 5.67 3.83 30.35 0.12 5.78 15 14 H 0.06 2.62 8.14 -2.39 -0.02 2.60 15 15 C 0.05 2.11 5.94 41.52 0.25 2.36 15 16 C -0.25 -9.26 10.60 66.78 0.71 -8.55 15 17 S 0.16 3.96 23.22 -56.49 -1.31 2.65 15 18 C 0.03 0.59 12.23 130.65 1.60 2.19 15 19 N -0.49 -15.98 10.43 -191.55 -2.00 -17.97 15 20 O -0.38 -20.27 9.78 -148.98 -1.46 -21.73 15 21 H 0.26 14.99 8.31 -92.71 -0.77 14.22 15 22 H 0.06 2.68 7.71 -2.39 -0.02 2.66 15 23 H 0.08 2.94 8.14 -2.39 -0.02 2.92 15 24 H 0.06 2.43 7.87 -2.39 -0.02 2.41 15 25 H 0.09 2.95 8.14 -2.39 -0.02 2.93 15 26 H 0.16 6.67 7.65 -2.91 -0.02 6.65 15 27 H 0.24 3.09 8.06 -2.91 -0.02 3.07 15 Total: -1.00 -68.19 250.12 2.57 -65.62 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.17 Total: 7.02 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 3.86 Total: -27.13 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: -1.72 Total: -72.62 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -1.46 Total: -21.73 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.31 Total: 2.65 kcal Total: -68.19 2.57 -65.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307400578.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.461 kcal (2) G-P(sol) polarization free energy of solvation -68.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds