Wall clock time and date at job start Mon Mar 30 2020 02:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09000 * 110.27772 * 302.37022 * 9 7 2 11 11 C 1.54947 * 110.30993 * 180.27759 * 9 7 2 12 12 C 1.55308 * 100.94297 * 204.64401 * 11 9 7 13 13 C 1.54377 * 102.25156 * 34.13547 * 12 11 9 14 14 H 1.08995 * 109.83074 * 98.15917 * 13 12 11 15 15 C 1.50704 * 109.82919 * 219.03923 * 13 12 11 16 16 C 1.33639 * 122.74841 * 124.73390 * 15 13 12 17 17 S 1.76200 * 107.92259 * 179.97438 * 16 15 13 18 18 C 1.70977 * 90.28356 * 0.27284 * 17 16 15 19 19 N 1.29032 * 110.16661 * 359.83824 * 18 17 16 20 20 O 1.43237 * 107.59298 * 338.64060 * 13 12 11 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.08998 * 111.12541 * 322.56333 * 11 9 7 23 23 H 1.09002 * 111.12025 * 86.72526 * 11 9 7 24 24 H 1.09002 * 110.84478 * 152.32236 * 12 11 9 25 25 H 1.09001 * 110.84353 * 275.94164 * 12 11 9 26 26 H 1.07994 * 126.03874 * 0.03525 * 16 15 13 27 27 H 1.08004 * 124.91778 * 179.84571 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.5919 -2.5508 0.8719 11 6 2.2407 -3.6913 0.0106 12 6 1.3625 -4.8062 -0.6202 13 6 0.5000 -4.0140 -1.6260 14 1 0.9291 -4.0944 -2.6247 15 6 -0.9070 -4.5539 -1.6293 16 6 -1.9770 -3.7847 -1.4070 17 16 -3.4089 -4.8072 -1.5013 18 6 -2.4258 -6.1688 -1.8223 19 7 -1.1826 -5.8243 -1.8455 20 8 0.4956 -2.6441 -1.2078 21 1 -0.4850 0.8400 0.0004 22 1 3.1128 -3.4808 -0.6085 23 1 2.5364 -3.9519 1.0269 24 1 1.9804 -5.5423 -1.1344 25 1 0.7381 -5.2823 0.1358 26 1 -1.9661 -2.7237 -1.2061 27 1 -2.7924 -7.1720 -1.9826 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307400587.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:22 Heat of formation + Delta-G solvation = -22.476443 kcal Electronic energy + Delta-G solvation = -13364.456828 eV Core-core repulsion = 11020.311130 eV Total energy + Delta-G solvation = -2344.145698 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.12109 -39.31550 -34.77755 -32.73401 -32.04648 -29.78855 -27.13738 -25.52407 -23.05106 -22.14129 -20.35976 -19.11178 -18.57198 -17.09114 -16.81637 -16.62040 -15.97054 -15.22532 -14.96879 -14.33034 -14.12405 -13.87236 -13.63663 -13.10479 -12.77158 -12.41871 -12.27830 -12.19073 -11.98928 -11.54180 -11.06018 -10.72898 -10.63258 -10.37342 -10.06102 -9.66046 -8.16537 -6.37162 -0.14190 0.50916 0.82339 1.41518 1.44366 1.51820 1.83406 2.40728 2.90493 3.26834 3.71176 3.89771 4.07034 4.17843 4.44076 4.57791 4.62947 4.75833 4.81066 4.94497 5.11513 5.13554 5.23805 5.54899 5.73762 6.15823 6.55493 6.76867 6.98454 7.38938 8.91651 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.041067 B = 0.008034 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.643743 B = 3484.354774 C = 4034.629507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.024 3.976 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.555 4.555 8 H 0.068 0.932 9 C 0.203 3.797 10 H -0.008 1.008 11 C -0.139 4.139 12 C -0.119 4.119 13 C 0.135 3.865 14 H 0.080 0.920 15 C 0.037 3.963 16 C -0.251 4.251 17 S 0.151 5.849 18 C 0.024 3.976 19 N -0.486 5.486 20 O -0.379 6.379 21 H 0.262 0.738 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.098 0.902 25 H 0.063 0.937 26 H 0.156 0.844 27 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.668 -10.825 -2.531 12.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.592 4.592 8 H 0.086 0.914 9 C 0.148 3.852 10 H 0.010 0.990 11 C -0.177 4.177 12 C -0.157 4.157 13 C 0.073 3.927 14 H 0.097 0.903 15 C -0.093 4.093 16 C -0.390 4.390 17 S 0.403 5.597 18 C -0.274 4.274 19 N -0.202 5.202 20 O -0.299 6.299 21 H 0.071 0.929 22 H 0.091 0.909 23 H 0.098 0.902 24 H 0.116 0.884 25 H 0.082 0.918 26 H 0.174 0.826 27 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -5.610 -10.817 -2.629 12.465 hybrid contribution 1.077 1.307 0.149 1.700 sum -4.534 -9.510 -2.479 10.823 Atomic orbital electron populations 1.70147 1.07720 1.27573 1.48545 1.25960 0.95649 1.03121 0.93105 0.85560 0.78384 0.78180 0.79161 1.19484 1.20887 1.18836 1.21509 0.93248 0.91358 1.53128 0.91381 1.20445 0.87842 0.93863 0.83083 0.98996 1.23247 0.98640 0.94520 1.01276 1.22871 0.97455 0.97694 0.97721 1.21014 0.88434 0.84351 0.98862 0.90271 1.20807 0.97991 0.88338 1.02191 1.26917 0.95608 1.05584 1.10927 1.83520 1.10409 1.00590 1.65215 1.29107 0.90404 1.05568 1.02358 1.66053 1.20416 1.16135 1.17552 1.88753 1.75045 1.21908 1.44145 0.92900 0.90879 0.90195 0.88384 0.91845 0.82631 0.74102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.53 13.05 21.45 0.28 -54.25 15 2 C 0.02 1.36 5.43 84.65 0.46 1.82 15 3 Si 0.96 44.08 29.54 68.60 2.03 46.10 15 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 15 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 15 7 C -0.56 -31.61 8.79 25.60 0.23 -31.38 15 8 H 0.07 3.69 7.76 -2.91 -0.02 3.67 15 9 C 0.20 10.81 3.22 30.51 0.10 10.90 15 10 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 15 11 C -0.14 -5.79 6.53 32.05 0.21 -5.58 15 12 C -0.12 -4.45 6.45 31.85 0.21 -4.24 15 13 C 0.14 5.78 4.07 30.32 0.12 5.90 15 14 H 0.08 3.27 8.14 -2.39 -0.02 3.25 15 15 C 0.04 1.47 5.91 41.52 0.25 1.72 15 16 C -0.25 -9.81 10.58 66.78 0.71 -9.10 15 17 S 0.15 3.97 23.22 -56.49 -1.31 2.66 15 18 C 0.02 0.58 12.23 130.65 1.60 2.18 15 19 N -0.49 -16.16 10.41 -191.54 -1.99 -18.16 15 20 O -0.38 -20.26 9.37 -148.98 -1.40 -21.66 15 21 H 0.26 14.95 8.31 -92.71 -0.77 14.18 15 22 H 0.07 2.94 8.04 -2.39 -0.02 2.93 15 23 H 0.08 3.01 8.14 -2.39 -0.02 3.00 15 24 H 0.10 3.07 8.14 -2.39 -0.02 3.05 15 25 H 0.06 2.35 7.84 -2.39 -0.02 2.34 15 26 H 0.16 7.16 7.61 -2.91 -0.02 7.14 15 27 H 0.24 3.36 8.06 -2.91 -0.02 3.33 15 Total: -1.00 -67.41 250.31 2.64 -64.77 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 1.17 Total: 8.31 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 3.87 Total: -27.78 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -1.71 Total: -72.41 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -1.40 Total: -21.66 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.31 Total: 2.66 kcal Total: -67.41 2.64 -64.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307400587.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.293 kcal (2) G-P(sol) polarization free energy of solvation -67.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds