Wall clock time and date at job start Mon Mar 30 2020 02:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00011 * 2 1 4 4 H 1.48503 * 109.47335 * 270.00167 * 3 2 1 5 5 H 1.48501 * 109.47095 * 30.00426 * 3 2 1 6 6 H 1.48502 * 109.47147 * 150.00003 * 3 2 1 7 7 C 1.37875 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00081 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00041 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.89257 * 59.48002 * 9 7 2 11 11 C 1.54382 * 109.82833 * 180.41565 * 9 7 2 12 12 C 1.55309 * 102.24767 * 140.87198 * 11 9 7 13 13 C 1.54949 * 100.94220 * 325.86330 * 12 11 9 14 14 H 1.08992 * 110.39720 * 277.48651 * 13 12 11 15 15 C 1.50706 * 110.30563 * 155.35923 * 13 12 11 16 16 C 1.33635 * 122.74484 * 127.83778 * 15 13 12 17 17 S 1.76195 * 107.92435 * 180.02562 * 16 15 13 18 18 C 1.70982 * 90.28098 * 359.97438 * 17 16 15 19 19 N 1.29027 * 110.16710 * 359.73559 * 18 17 16 20 20 O 1.43238 * 109.82669 * 298.55183 * 9 7 2 21 21 H 0.97005 * 119.99996 * 0.02562 * 1 2 3 22 22 H 1.08997 * 110.84872 * 259.05778 * 11 9 7 23 23 H 1.09003 * 110.85015 * 22.48056 * 11 9 7 24 24 H 1.09002 * 111.12496 * 207.94882 * 12 11 9 25 25 H 1.08995 * 111.12686 * 83.78344 * 12 11 9 26 26 H 1.08001 * 126.04187 * 359.97438 * 16 15 13 27 27 H 1.08000 * 124.91334 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6145 -2.5599 -0.8832 11 6 2.2469 -3.6788 0.0094 12 6 1.5542 -4.6868 0.9665 13 6 0.8776 -3.7208 1.9715 14 1 1.5916 -3.4007 2.7302 15 6 -0.3092 -4.3867 2.6190 16 6 -0.4737 -4.4409 3.9440 17 16 -1.9770 -5.3005 4.2691 18 6 -2.2351 -5.5009 2.5908 19 7 -1.2726 -4.9580 1.9248 20 8 0.4508 -2.5982 1.1834 21 1 -0.4850 0.8401 -0.0004 22 1 2.3553 -4.1033 -0.9887 23 1 3.2141 -3.3667 0.4035 24 1 2.2864 -5.3223 1.4647 25 1 0.8129 -5.2853 0.4371 26 1 0.1967 -4.0309 4.6849 27 1 -3.0836 -6.0046 2.1517 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307400605.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:27 Heat of formation + Delta-G solvation = -22.022961 kcal Electronic energy + Delta-G solvation = -13309.925606 eV Core-core repulsion = 10965.799572 eV Total energy + Delta-G solvation = -2344.126033 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.04982 -39.28037 -34.72241 -32.67269 -32.21771 -29.76817 -26.91296 -25.63447 -23.15430 -22.04107 -20.52872 -18.90011 -18.54985 -17.42657 -16.69049 -16.26749 -15.95236 -15.35735 -14.88225 -14.25596 -14.10943 -13.93414 -13.69491 -13.07659 -12.79320 -12.43353 -12.34158 -12.11628 -11.79584 -11.56948 -11.11843 -10.69715 -10.50830 -10.37338 -9.93042 -9.66030 -8.11919 -6.35276 -0.17391 0.54127 0.78760 1.39802 1.41607 1.52520 1.83122 2.41089 3.10266 3.36105 3.72296 3.92950 3.98384 4.27141 4.39248 4.43508 4.61381 4.67898 4.84982 4.95833 5.09680 5.18541 5.27040 5.61232 5.74982 6.18395 6.59208 6.89819 7.04226 7.42469 8.95203 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.041837 B = 0.007478 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.102511 B = 3743.229910 C = 4062.993058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.563 4.563 8 H 0.067 0.933 9 C 0.199 3.801 10 H -0.006 1.006 11 C -0.135 4.135 12 C -0.128 4.128 13 C 0.133 3.867 14 H 0.075 0.925 15 C 0.050 3.950 16 C -0.256 4.256 17 S 0.172 5.828 18 C 0.011 3.989 19 N -0.496 5.496 20 O -0.383 6.383 21 H 0.260 0.740 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.068 0.932 26 H 0.194 0.806 27 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 -11.651 8.892 14.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.182 4.182 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.601 4.601 8 H 0.085 0.915 9 C 0.144 3.856 10 H 0.012 0.988 11 C -0.172 4.172 12 C -0.166 4.166 13 C 0.073 3.927 14 H 0.093 0.907 15 C -0.081 4.081 16 C -0.396 4.396 17 S 0.424 5.576 18 C -0.287 4.287 19 N -0.211 5.211 20 O -0.303 6.303 21 H 0.069 0.931 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.117 0.883 25 H 0.087 0.913 26 H 0.211 0.789 27 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.313 -11.738 9.239 15.116 hybrid contribution 0.916 1.379 -0.750 1.817 sum -1.397 -10.358 8.490 13.466 Atomic orbital electron populations 1.70232 1.07980 1.27277 1.48950 1.26024 0.95531 1.03310 0.93293 0.85501 0.78739 0.78453 0.78542 1.19519 1.21034 1.18525 1.21855 0.93217 0.92032 1.52962 0.91491 1.20182 0.87952 0.93700 0.83788 0.98821 1.23087 0.99225 0.95014 0.99924 1.23109 0.99537 0.97320 0.96646 1.21430 0.90231 0.86925 0.94161 0.90696 1.20404 0.97109 1.00157 0.90442 1.27157 1.03844 1.09158 0.99401 1.83395 1.15583 1.49595 1.09003 1.29010 1.02035 1.02883 0.94783 1.66018 1.02947 1.11430 1.40677 1.88735 1.59600 1.46207 1.35767 0.93140 0.90669 0.90694 0.88278 0.91285 0.78869 0.75514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.73 12.91 21.45 0.28 -57.45 15 2 C 0.02 1.18 5.41 84.65 0.46 1.63 15 3 Si 0.96 45.19 29.54 68.60 2.03 47.21 15 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 5 H -0.28 -13.17 7.11 99.48 0.71 -12.47 15 6 H -0.26 -11.61 7.11 99.48 0.71 -10.91 15 7 C -0.56 -32.93 8.75 25.60 0.22 -32.70 15 8 H 0.07 3.70 7.52 -2.91 -0.02 3.68 15 9 C 0.20 11.09 3.36 30.32 0.10 11.19 15 10 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 15 11 C -0.13 -5.74 6.53 31.86 0.21 -5.53 15 12 C -0.13 -4.83 6.55 32.05 0.21 -4.62 15 13 C 0.13 5.74 3.85 30.52 0.12 5.86 15 14 H 0.08 3.02 8.06 -2.39 -0.02 3.00 15 15 C 0.05 1.91 5.82 41.52 0.24 2.15 15 16 C -0.26 -7.63 11.09 66.77 0.74 -6.89 15 17 S 0.17 3.83 23.22 -56.49 -1.31 2.52 15 18 C 0.01 0.29 12.23 130.65 1.60 1.88 15 19 N -0.50 -18.70 10.06 -191.54 -1.93 -20.63 15 20 O -0.38 -21.67 10.18 -148.98 -1.52 -23.19 15 21 H 0.26 15.56 8.31 -92.70 -0.77 14.79 15 22 H 0.07 2.91 8.14 -2.39 -0.02 2.89 15 23 H 0.07 3.03 7.65 -2.39 -0.02 3.01 15 24 H 0.10 2.98 8.14 -2.39 -0.02 2.96 15 25 H 0.07 2.69 7.67 -2.39 -0.02 2.67 15 26 H 0.19 4.77 8.06 -2.91 -0.02 4.75 15 27 H 0.23 4.17 8.06 -2.91 -0.02 4.14 15 Total: -1.00 -74.46 250.57 2.62 -71.84 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 1.17 Total: 6.71 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 3.90 Total: -27.01 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -1.65 Total: -78.08 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -1.52 Total: -23.19 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -1.31 Total: 2.52 kcal Total: -74.46 2.62 -71.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307400605.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.818 kcal (2) G-P(sol) polarization free energy of solvation -74.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds