Wall clock time and date at job start Mon Mar 30 2020 02:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38757 * 119.71626 * 2 1 4 4 C 1.36455 * 120.44830 * 179.72411 * 3 2 1 5 5 N 1.48020 * 120.06732 * 179.97438 * 4 3 2 6 6 O 1.31703 * 119.99686 * 353.82580 * 5 4 3 7 7 O 1.31698 * 120.00655 * 173.83391 * 5 4 3 8 8 C 1.41293 * 119.86666 * 359.97438 * 4 3 2 9 9 C 1.40353 * 120.27550 * 180.02562 * 8 4 3 10 10 H 1.07996 * 119.99654 * 325.20280 * 9 8 4 11 11 C 1.46532 * 119.99673 * 145.20468 * 9 8 4 12 12 N 1.29505 * 120.00478 * 351.64668 * 11 9 8 13 13 Si 1.86804 * 119.99983 * 171.64521 * 11 9 8 14 14 H 1.48502 * 109.46786 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47231 * 120.00111 * 13 11 9 16 16 H 1.48499 * 109.47062 * 240.00372 * 13 11 9 17 17 C 1.41234 * 119.44269 * 0.02562 * 8 4 3 18 18 C 1.37712 * 119.55241 * 359.97438 * 17 8 4 19 19 F 1.35100 * 119.93887 * 180.02562 * 18 17 8 20 20 H 1.09006 * 109.47565 * 89.99803 * 1 2 3 21 21 H 1.08998 * 109.47592 * 209.99854 * 1 2 3 22 22 H 1.09006 * 109.46808 * 330.00175 * 1 2 3 23 23 H 1.07998 * 119.77358 * 359.69666 * 3 2 1 24 24 H 0.97002 * 120.00405 * 179.97438 * 12 11 9 25 25 H 1.08006 * 120.21705 * 180.02562 * 17 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.2051 0.0000 4 6 3.5592 1.2225 0.0057 5 7 4.2844 2.5129 0.0050 6 8 3.6189 3.6422 -0.1236 7 8 5.5950 2.5319 0.1330 8 6 4.2784 0.0064 0.0121 9 6 5.6819 0.0143 0.0185 10 1 6.2199 0.7840 -0.5148 11 6 6.4170 -1.0218 0.7488 12 7 5.7810 -1.8466 1.5184 13 14 8.2718 -1.1531 0.5695 14 1 8.7547 -0.1020 -0.3617 15 1 8.9116 -0.9709 1.8972 16 1 8.6235 -2.4912 0.0300 17 6 3.5731 -1.2173 0.0121 18 6 2.1961 -1.2075 0.0063 19 9 1.5135 -2.3734 0.0067 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8901 0.5138 23 1 1.6465 2.1355 -0.0050 24 1 6.2676 -2.5327 2.0016 25 1 4.1103 -2.1543 0.0174 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307449205.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:39 Heat of formation + Delta-G solvation = -26.630888 kcal Electronic energy + Delta-G solvation = -15087.911556 eV Core-core repulsion = 12177.372532 eV Total energy + Delta-G solvation = -2910.539024 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.18041 -38.60184 -36.50190 -34.69214 -32.75601 -31.85511 -30.00169 -28.09917 -25.42772 -23.85162 -21.71234 -20.37218 -18.49065 -16.74965 -16.62548 -16.31505 -15.23139 -15.12407 -14.94515 -14.27850 -13.58255 -13.24673 -12.80770 -12.61933 -12.47921 -12.10633 -11.70778 -11.50526 -11.49334 -10.91048 -10.74497 -10.27327 -9.92499 -9.63989 -9.29862 -9.15017 -8.22396 -8.01081 -7.68328 -5.19058 0.83797 2.11208 2.52990 2.70821 2.76214 2.81933 2.94672 3.43189 3.78171 4.64676 5.07682 5.56622 5.60797 5.81577 6.05663 6.07019 6.16871 6.32868 6.38222 6.59883 6.81430 6.98377 7.06914 7.33483 7.44610 7.70360 7.88962 8.03246 8.57227 9.14757 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.023280 B = 0.012440 C = 0.008313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.448282 B = 2250.200605 C = 3367.364158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.229 4.229 3 C -0.001 4.001 4 C -0.107 4.107 5 N 0.038 4.962 6 O -0.337 6.337 7 O -0.261 6.261 8 C 0.105 3.895 9 C -0.325 4.325 10 H 0.132 0.868 11 C 0.056 3.944 12 N -0.714 5.714 13 Si 0.940 3.060 14 H -0.242 1.242 15 H -0.261 1.261 16 H -0.263 1.263 17 C -0.162 4.162 18 C 0.126 3.874 19 F -0.151 7.151 20 H 0.055 0.945 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.129 0.871 24 H 0.306 0.694 25 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 -5.048 -0.727 5.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.233 4.233 3 C -0.020 4.020 4 C -0.207 4.207 5 N 0.465 4.535 6 O -0.486 6.486 7 O -0.428 6.428 8 C 0.100 3.900 9 C -0.352 4.352 10 H 0.150 0.850 11 C -0.176 4.176 12 N -0.335 5.335 13 Si 0.760 3.240 14 H -0.165 1.165 15 H -0.185 1.185 16 H -0.187 1.187 17 C -0.183 4.183 18 C 0.106 3.894 19 F -0.130 7.130 20 H 0.074 0.926 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.146 0.854 24 H 0.119 0.881 25 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.384 -5.417 -0.571 5.620 hybrid contribution 0.675 -0.027 0.156 0.694 sum -0.708 -5.444 -0.415 5.506 Atomic orbital electron populations 1.20386 0.91145 1.01792 1.01161 1.19141 0.95675 0.90680 1.17762 1.19865 0.91483 0.97545 0.93148 1.19856 0.90819 0.80971 1.29031 1.49769 1.02241 1.03306 0.98219 1.96091 1.68230 1.19222 1.65016 1.96060 0.90812 1.95977 1.59938 1.16941 0.93675 0.88056 0.91338 1.22356 0.91137 1.05500 1.16184 0.85031 1.28038 1.04440 0.92353 0.92795 1.69069 1.41753 1.09482 1.13147 0.85685 0.77299 0.80229 0.80797 1.16476 1.18535 1.18726 1.21293 0.90646 0.98859 1.07492 1.17529 0.89944 0.80178 1.01734 1.91379 1.80433 1.47164 1.93983 0.92580 0.92363 0.92263 0.85355 0.88094 0.84328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.42 9.82 36.00 0.35 -1.07 15 2 C -0.23 -4.65 5.92 -104.14 -0.62 -5.26 15 3 C 0.00 -0.02 9.16 -40.03 -0.37 -0.39 15 4 C -0.11 -2.67 6.90 -79.43 -0.55 -3.21 15 5 N 0.04 1.02 4.98 34.21 0.17 1.19 15 6 O -0.34 -9.28 19.14 -31.57 -0.60 -9.88 15 7 O -0.26 -7.21 16.25 -31.57 -0.51 -7.72 15 8 C 0.11 2.56 5.52 -106.80 -0.59 1.97 15 9 C -0.33 -7.69 7.86 -35.45 -0.28 -7.97 15 10 H 0.13 3.21 5.87 -52.49 -0.31 2.90 15 11 C 0.06 1.15 5.43 -15.19 -0.08 1.07 15 12 N -0.71 -14.90 11.30 55.98 0.63 -14.27 15 13 Si 0.94 15.58 29.65 -169.99 -5.04 10.54 15 14 H -0.24 -4.14 7.11 56.52 0.40 -3.74 15 15 H -0.26 -4.28 7.11 56.52 0.40 -3.88 15 16 H -0.26 -4.10 7.11 56.52 0.40 -3.70 15 17 C -0.16 -3.67 8.68 -38.64 -0.34 -4.00 15 18 C 0.13 2.68 7.23 -39.48 -0.29 2.39 15 19 F -0.15 -3.00 16.45 2.25 0.04 -2.97 15 20 H 0.06 0.83 8.14 -51.93 -0.42 0.40 15 21 H 0.06 0.89 7.62 -51.93 -0.40 0.50 15 22 H 0.06 0.86 8.08 -51.93 -0.42 0.44 15 23 H 0.13 2.68 7.55 -52.49 -0.40 2.28 15 24 H 0.31 5.48 8.27 -40.82 -0.34 5.14 15 25 H 0.14 3.06 6.67 -52.48 -0.35 2.71 15 LS Contribution 237.81 15.07 3.58 3.58 Total: -1.00 -27.02 237.81 -5.91 -32.93 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -1.43 Total: 3.06 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -2.75 Total: -16.47 kcal Atomic # 7 Polarization: -13.88 SS G_CDS: 0.80 Total: -13.07 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -1.12 Total: -17.61 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.04 Total: -2.97 kcal Atomic # 14 Polarization: 15.58 SS G_CDS: -5.04 Total: 10.54 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.02 -5.91 -32.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307449205.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.299 kcal (2) G-P(sol) polarization free energy of solvation -27.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds