Wall clock time and date at job start Mon Mar 30 2020 02:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38757 * 119.71626 * 2 1 4 4 C 1.36455 * 120.44830 * 179.72411 * 3 2 1 5 5 N 1.48020 * 120.06732 * 179.97438 * 4 3 2 6 6 O 1.31703 * 119.99686 * 353.82580 * 5 4 3 7 7 O 1.31698 * 120.00655 * 173.83391 * 5 4 3 8 8 C 1.41293 * 119.86666 * 359.97438 * 4 3 2 9 9 C 1.40353 * 120.27550 * 180.02562 * 8 4 3 10 10 H 1.07996 * 119.99654 * 325.20280 * 9 8 4 11 11 C 1.46532 * 119.99673 * 145.20468 * 9 8 4 12 12 N 1.29505 * 120.00478 * 351.64668 * 11 9 8 13 13 Si 1.86804 * 119.99983 * 171.64521 * 11 9 8 14 14 H 1.48502 * 109.46786 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47231 * 120.00111 * 13 11 9 16 16 H 1.48499 * 109.47062 * 240.00372 * 13 11 9 17 17 C 1.41234 * 119.44269 * 0.02562 * 8 4 3 18 18 C 1.37712 * 119.55241 * 359.97438 * 17 8 4 19 19 F 1.35100 * 119.93887 * 180.02562 * 18 17 8 20 20 H 1.09006 * 109.47565 * 89.99803 * 1 2 3 21 21 H 1.08998 * 109.47592 * 209.99854 * 1 2 3 22 22 H 1.09006 * 109.46808 * 330.00175 * 1 2 3 23 23 H 1.07998 * 119.77358 * 359.69666 * 3 2 1 24 24 H 0.97002 * 120.00405 * 179.97438 * 12 11 9 25 25 H 1.08006 * 120.21705 * 180.02562 * 17 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.2051 0.0000 4 6 3.5592 1.2225 0.0057 5 7 4.2844 2.5129 0.0050 6 8 3.6189 3.6422 -0.1236 7 8 5.5950 2.5319 0.1330 8 6 4.2784 0.0064 0.0121 9 6 5.6819 0.0143 0.0185 10 1 6.2199 0.7840 -0.5148 11 6 6.4170 -1.0218 0.7488 12 7 5.7810 -1.8466 1.5184 13 14 8.2718 -1.1531 0.5695 14 1 8.7547 -0.1020 -0.3617 15 1 8.9116 -0.9709 1.8972 16 1 8.6235 -2.4912 0.0300 17 6 3.5731 -1.2173 0.0121 18 6 2.1961 -1.2075 0.0063 19 9 1.5135 -2.3734 0.0067 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8901 0.5138 23 1 1.6465 2.1355 -0.0050 24 1 6.2676 -2.5327 2.0016 25 1 4.1103 -2.1543 0.0174 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307449205.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:39 Heat of formation + Delta-G solvation = -41.199204 kcal Electronic energy + Delta-G solvation = -15088.543286 eV Core-core repulsion = 12177.372532 eV Total energy + Delta-G solvation = -2911.170754 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.83736 -40.39665 -38.30525 -36.45378 -34.61636 -33.55026 -31.79032 -29.78488 -27.21636 -25.59931 -23.47445 -22.12008 -20.27314 -18.57385 -18.41906 -18.07983 -16.88215 -16.77627 -16.60365 -16.13168 -15.28925 -14.77387 -14.39895 -14.18220 -14.03049 -13.74039 -13.33352 -13.16956 -12.87646 -12.54488 -12.18691 -11.90299 -11.55793 -11.47163 -11.26750 -11.08920 -10.03548 -9.75314 -9.38479 -7.05381 -1.13306 0.41909 0.69397 1.14801 1.30331 1.38322 1.52417 2.06477 2.13423 2.82512 3.34758 3.86898 4.01575 4.25197 4.31439 4.45302 4.68720 4.84271 4.88188 4.98508 5.10348 5.24523 5.34463 5.53179 5.66892 5.88761 5.96441 6.20698 6.68809 7.49084 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.023280 B = 0.012440 C = 0.008313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.448282 B = 2250.200605 C = 3367.364158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.190 4.190 3 C -0.029 4.029 4 C -0.104 4.104 5 N 0.034 4.966 6 O -0.410 6.410 7 O -0.336 6.336 8 C 0.060 3.940 9 C -0.293 4.293 10 H 0.120 0.880 11 C 0.021 3.979 12 N -0.711 5.711 13 Si 1.007 2.993 14 H -0.257 1.257 15 H -0.252 1.252 16 H -0.235 1.235 17 C -0.152 4.152 18 C 0.118 3.882 19 F -0.138 7.138 20 H 0.078 0.922 21 H 0.072 0.928 22 H 0.076 0.924 23 H 0.136 0.864 24 H 0.329 0.671 25 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.222 -8.504 -0.314 8.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.195 4.195 3 C -0.048 4.048 4 C -0.211 4.211 5 N 0.432 4.568 6 O -0.539 6.539 7 O -0.481 6.481 8 C 0.055 3.945 9 C -0.321 4.321 10 H 0.137 0.863 11 C -0.210 4.210 12 N -0.333 5.333 13 Si 0.822 3.178 14 H -0.180 1.180 15 H -0.176 1.176 16 H -0.157 1.157 17 C -0.172 4.172 18 C 0.098 3.902 19 F -0.116 7.116 20 H 0.097 0.903 21 H 0.091 0.909 22 H 0.095 0.905 23 H 0.153 0.847 24 H 0.144 0.856 25 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.473 -8.676 -0.154 8.802 hybrid contribution 0.656 0.438 0.100 0.795 sum -0.817 -8.238 -0.054 8.279 Atomic orbital electron populations 1.20562 0.87628 1.03480 1.03122 1.19679 0.98067 0.89418 1.12339 1.20037 0.90635 0.98766 0.95408 1.20327 0.92057 0.80536 1.28186 1.49768 1.01898 1.03545 1.01635 1.96013 1.68252 1.20295 1.69334 1.95971 0.91833 1.96109 1.64205 1.17246 0.94312 0.88700 0.94291 1.22859 0.91614 1.05026 1.12615 0.86271 1.28882 1.08498 0.91470 0.92160 1.68977 1.44113 1.08759 1.11419 0.84763 0.71110 0.81018 0.80891 1.18015 1.17566 1.15749 1.21337 0.91447 0.98087 1.06342 1.17531 0.89658 0.80967 1.02000 1.91415 1.79995 1.46372 1.93831 0.90316 0.90865 0.90463 0.84654 0.85625 0.83661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.59 9.82 71.23 0.70 -1.89 15 2 C -0.19 -7.28 5.92 -19.55 -0.12 -7.40 15 3 C -0.03 -1.30 9.16 21.98 0.20 -1.10 15 4 C -0.10 -5.37 6.90 36.71 0.25 -5.11 15 5 N 0.03 1.99 4.98 -45.66 -0.23 1.76 15 6 O -0.41 -24.58 19.14 3.51 0.07 -24.51 15 7 O -0.34 -20.00 16.25 3.52 0.06 -19.94 15 8 C 0.06 2.91 5.52 -21.28 -0.12 2.79 15 9 C -0.29 -13.83 7.86 24.95 0.20 -13.63 15 10 H 0.12 5.99 5.87 -2.91 -0.02 5.97 15 11 C 0.02 0.83 5.43 87.20 0.47 1.31 15 12 N -0.71 -27.35 11.30 23.21 0.26 -27.09 15 13 Si 1.01 29.39 29.65 68.60 2.03 31.42 15 14 H -0.26 -8.13 7.11 99.48 0.71 -7.42 15 15 H -0.25 -7.07 7.11 99.48 0.71 -6.36 15 16 H -0.23 -5.89 7.11 99.48 0.71 -5.18 15 17 C -0.15 -6.55 8.68 22.88 0.20 -6.35 15 18 C 0.12 4.70 7.23 22.34 0.16 4.87 15 19 F -0.14 -4.94 16.45 44.97 0.74 -4.20 15 20 H 0.08 1.98 8.14 -2.38 -0.02 1.96 15 21 H 0.07 1.91 7.62 -2.39 -0.02 1.89 15 22 H 0.08 1.97 8.08 -2.38 -0.02 1.95 15 23 H 0.14 5.76 7.55 -2.91 -0.02 5.74 15 24 H 0.33 10.37 8.27 -92.71 -0.77 9.61 15 25 H 0.15 5.99 6.67 -2.91 -0.02 5.97 15 Total: -1.00 -61.08 237.81 6.12 -54.96 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 1.24 Total: 14.12 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 1.95 Total: -26.52 kcal Atomic # 7 Polarization: -25.36 SS G_CDS: 0.03 Total: -25.33 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: 0.12 Total: -44.46 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.74 Total: -4.20 kcal Atomic # 14 Polarization: 29.39 SS G_CDS: 2.03 Total: 31.42 kcal Total: -61.08 6.12 -54.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307449205.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.759 kcal (2) G-P(sol) polarization free energy of solvation -61.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds