Wall clock time and date at job start Mon Mar 30 2020 02:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38755 * 119.71444 * 2 1 4 4 C 1.36457 * 120.45386 * 180.02562 * 3 2 1 5 5 C 1.41285 * 119.86032 * 0.29670 * 4 3 2 6 6 C 1.40353 * 120.27560 * 179.69939 * 5 4 3 7 7 H 1.08008 * 119.99762 * 154.55635 * 6 5 4 8 8 C 1.46537 * 120.00021 * 334.56387 * 6 5 4 9 9 N 1.29502 * 119.99859 * 161.21864 * 8 6 5 10 10 Si 1.86793 * 120.00040 * 341.22089 * 8 6 5 11 11 H 1.48503 * 109.47371 * 94.23094 * 10 8 6 12 12 H 1.48501 * 109.47359 * 214.23008 * 10 8 6 13 13 H 1.48501 * 109.47209 * 334.23051 * 10 8 6 14 14 C 1.41238 * 119.44803 * 359.43092 * 5 4 3 15 15 N 1.48018 * 120.22464 * 180.26824 * 14 5 4 16 16 O 1.31697 * 119.99887 * 270.29867 * 15 14 5 17 17 O 1.31697 * 119.99507 * 90.30517 * 15 14 5 18 18 C 1.37715 * 119.54699 * 0.57013 * 14 5 4 19 19 F 1.35101 * 119.94052 * 179.72140 * 18 14 5 20 20 H 1.08999 * 109.47439 * 89.99933 * 1 2 3 21 21 H 1.09003 * 109.47033 * 209.99916 * 1 2 3 22 22 H 1.08995 * 109.47055 * 329.99140 * 1 2 3 23 23 H 1.08005 * 119.77242 * 0.02685 * 3 2 1 24 24 H 1.07998 * 120.06925 * 180.02562 * 4 3 2 25 25 H 0.96999 * 120.00211 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.2051 0.0000 4 6 3.5592 1.2227 -0.0005 5 6 4.2784 0.0066 -0.0074 6 6 5.6819 0.0146 -0.0144 7 1 6.2287 -0.8281 0.3825 8 6 6.4054 1.1662 -0.5599 9 7 7.6492 1.3545 -0.2523 10 14 5.5335 2.3628 -1.6989 11 1 5.0010 3.5010 -0.9075 12 1 6.4933 2.8705 -2.7120 13 1 4.4132 1.6683 -2.3828 14 6 3.5733 -1.2171 -0.0015 15 7 4.3095 -2.5013 -0.0026 16 8 4.6365 -3.0718 -1.1436 17 8 4.6373 -3.0732 1.1375 18 6 2.1962 -1.2075 -0.0010 19 9 1.5137 -2.3734 -0.0010 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5139 23 1 1.6464 2.1356 0.0004 24 1 4.0882 2.1643 -0.0001 25 1 8.1282 2.1166 -0.6137 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307660115.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:52 Heat of formation + Delta-G solvation = -33.948165 kcal Electronic energy + Delta-G solvation = -15242.273945 eV Core-core repulsion = 12331.417620 eV Total energy + Delta-G solvation = -2910.856325 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.26503 -40.59874 -39.18485 -36.11637 -35.48063 -34.04395 -32.18411 -29.87169 -27.74881 -25.42567 -23.58368 -22.60229 -20.28218 -19.36374 -19.17350 -18.11733 -17.77985 -17.07507 -16.90995 -16.22698 -15.67218 -15.06942 -14.43881 -14.33541 -14.07246 -13.72272 -13.28071 -13.15273 -12.83267 -12.64661 -12.56857 -12.32244 -11.96083 -11.90318 -11.83382 -11.28632 -10.19701 -9.85201 -9.42518 -7.08596 -1.28308 -0.01930 0.30481 0.35900 1.14303 1.31765 1.41812 1.90154 2.11370 2.79109 3.03057 3.84711 3.93289 4.16163 4.23432 4.43168 4.53239 4.71565 4.88490 4.95562 5.07464 5.21834 5.29244 5.45284 5.51708 5.57528 5.76834 6.00917 6.13433 7.59237 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.024616 B = 0.013603 C = 0.009596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.178279 B = 2057.804053 C = 2917.170053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.233 4.233 3 C -0.011 4.011 4 C -0.229 4.229 5 C 0.115 3.885 6 C -0.447 4.447 7 H 0.048 0.952 8 C 0.047 3.953 9 N -0.764 5.764 10 Si 0.978 3.022 11 H -0.217 1.217 12 H -0.260 1.260 13 H -0.244 1.244 14 C -0.217 4.217 15 N 0.010 4.990 16 O -0.174 6.174 17 O -0.201 6.201 18 C 0.169 3.831 19 F -0.149 7.149 20 H 0.074 0.926 21 H 0.052 0.948 22 H 0.097 0.903 23 H 0.178 0.822 24 H 0.141 0.859 25 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.100 8.344 -2.411 12.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.235 4.235 3 C -0.029 4.029 4 C -0.248 4.248 5 C 0.111 3.889 6 C -0.471 4.471 7 H 0.066 0.934 8 C -0.182 4.182 9 N -0.383 5.383 10 Si 0.795 3.205 11 H -0.140 1.140 12 H -0.185 1.185 13 H -0.168 1.168 14 C -0.300 4.300 15 N 0.503 4.497 16 O -0.382 6.382 17 O -0.401 6.401 18 C 0.149 3.851 19 F -0.127 7.127 20 H 0.092 0.908 21 H 0.071 0.929 22 H 0.115 0.885 23 H 0.195 0.805 24 H 0.158 0.842 25 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.171 9.021 -2.317 13.071 hybrid contribution 0.937 -1.227 -0.009 1.544 sum -8.233 7.794 -2.326 11.573 Atomic orbital electron populations 1.20496 0.87294 1.03485 1.02853 1.19746 0.98114 0.89089 1.16541 1.20885 0.92843 0.97903 0.91283 1.21068 0.95181 0.95309 1.13220 1.17084 0.92856 0.88778 0.90192 1.20931 0.90594 1.02791 1.32788 0.93411 1.28763 0.95326 0.98032 0.96068 1.68930 1.11788 1.26687 1.30872 0.85369 0.79581 0.77694 0.77858 1.14002 1.18482 1.16751 1.20314 0.89614 0.80283 1.39790 1.50398 0.95865 1.02617 1.00796 1.96123 1.58442 1.67565 1.16071 1.96143 1.59817 1.67892 1.16210 1.17148 0.84962 0.82616 1.00414 1.91414 1.79886 1.47574 1.93855 0.90764 0.92927 0.88451 0.80509 0.84211 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.13 9.82 71.24 0.70 -1.43 15 2 C -0.23 -8.15 5.92 -19.55 -0.12 -8.27 15 3 C -0.01 -0.36 9.61 21.98 0.21 -0.15 15 4 C -0.23 -8.95 7.26 22.60 0.16 -8.79 15 5 C 0.12 5.69 5.28 -21.28 -0.11 5.58 15 6 C -0.45 -24.03 9.51 24.95 0.24 -23.79 15 7 H 0.05 2.96 7.73 -2.91 -0.02 2.93 15 8 C 0.05 2.17 5.59 87.20 0.49 2.66 15 9 N -0.76 -35.65 13.89 23.21 0.32 -35.33 15 10 Si 0.98 33.41 24.57 68.60 1.69 35.10 15 11 H -0.22 -6.08 6.69 99.48 0.67 -5.41 15 12 H -0.26 -8.14 7.11 99.48 0.71 -7.43 15 13 H -0.24 -8.78 6.85 99.48 0.68 -8.10 15 14 C -0.22 -11.13 6.32 36.99 0.23 -10.90 15 15 N 0.01 0.57 3.92 -45.01 -0.18 0.39 15 16 O -0.17 -9.62 19.97 3.52 0.07 -9.55 15 17 O -0.20 -11.28 19.97 3.52 0.07 -11.21 15 18 C 0.17 7.54 7.23 22.34 0.16 7.70 15 19 F -0.15 -6.60 16.28 44.97 0.73 -5.86 15 20 H 0.07 1.66 8.14 -2.39 -0.02 1.64 15 21 H 0.05 1.38 7.62 -2.39 -0.02 1.36 15 22 H 0.10 1.80 8.08 -2.39 -0.02 1.78 15 23 H 0.18 3.70 8.06 -2.91 -0.02 3.67 15 24 H 0.14 4.86 4.26 -2.91 -0.01 4.85 15 25 H 0.32 12.59 8.27 -92.71 -0.77 11.82 15 Total: -1.00 -62.58 237.92 5.84 -56.73 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.17 Total: 7.11 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 1.97 Total: -37.39 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.15 Total: -34.93 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: 0.14 Total: -20.76 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 0.73 Total: -5.86 kcal Atomic # 14 Polarization: 33.41 SS G_CDS: 1.69 Total: 35.10 kcal Total: -62.58 5.84 -56.73 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307660115.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.785 kcal (2) G-P(sol) polarization free energy of solvation -62.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds