Wall clock time and date at job start Mon Mar 30 2020 02:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.20233 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47167 * 89.99892 * 6 5 4 8 8 O 1.21288 * 120.00754 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00007 * 180.02562 * 7 6 5 10 10 C 1.37094 * 120.00344 * 179.97438 * 9 7 6 11 11 H 1.08001 * 119.99974 * 359.97438 * 10 9 7 12 12 C 1.38953 * 120.00492 * 179.97438 * 10 9 7 13 13 N 1.31412 * 119.99588 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00223 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47224 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47004 * 120.00301 * 14 12 10 17 17 H 1.48494 * 109.47087 * 240.00017 * 14 12 10 18 18 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 19 19 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 22 22 H 1.07997 * 122.54296 * 359.95309 * 3 2 1 23 23 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 24 24 H 1.09010 * 109.46884 * 209.99886 * 6 5 4 25 25 H 1.09002 * 109.47203 * 329.99303 * 6 5 4 26 26 H 0.97005 * 119.99811 * 359.97438 * 9 7 6 27 27 H 0.97002 * 119.99918 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3861 -0.9770 0.0005 7 6 5.8564 -1.1535 1.4212 8 8 5.1187 -0.8763 2.3432 9 7 7.0973 -1.6184 1.6674 10 6 7.5254 -1.7785 2.9599 11 1 6.8685 -1.5317 3.7809 12 6 8.8045 -2.2584 3.2139 13 7 9.6040 -2.5582 2.2150 14 14 9.3880 -2.4758 4.9750 15 1 8.3068 -2.0699 5.9084 16 1 9.7345 -3.9007 5.2093 17 1 10.5865 -1.6304 5.2073 18 16 2.5210 -1.4371 0.0077 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 0.8900 0.5138 21 1 -0.3633 -0.8900 0.5139 22 1 1.8669 2.0895 -0.0007 23 1 4.3721 1.6351 0.0002 24 1 5.4136 -1.9379 -0.5135 25 1 6.0389 -0.2713 -0.5134 26 1 7.6874 -1.8398 0.9301 27 1 10.4970 -2.8929 2.3922 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307745488.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:49 Heat of formation + Delta-G solvation = -17.765522 kcal Electronic energy + Delta-G solvation = -12656.147462 eV Core-core repulsion = 10312.206045 eV Total energy + Delta-G solvation = -2343.941417 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.47286 -37.31560 -34.00245 -32.56066 -31.23300 -29.41183 -25.52539 -24.05019 -22.45645 -19.54273 -18.42135 -17.83351 -16.46361 -15.89532 -14.96262 -14.50918 -14.02309 -13.87541 -13.74732 -13.04076 -12.60284 -12.37512 -12.28241 -11.67399 -11.48345 -11.39627 -11.16314 -10.93993 -10.37448 -10.34401 -10.22692 -9.53044 -8.51803 -8.08648 -8.00516 -7.97270 -6.42488 -3.83310 1.34220 1.96027 2.36032 3.09695 3.15969 3.26741 3.34458 3.89545 4.18316 5.00145 5.05594 5.22885 5.26107 5.34861 5.53383 5.63340 5.78843 5.94380 5.97318 6.04300 6.34759 6.50565 6.65932 6.88347 7.54985 8.04651 8.59619 9.16822 9.52701 10.04073 10.75208 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.063081 B = 0.005708 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.769083 B = 4904.621248 C = 5009.829791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.199 4.199 3 C -0.132 4.132 4 C -0.141 4.141 5 C -0.125 4.125 6 C -0.068 4.068 7 C 0.442 3.558 8 O -0.584 6.584 9 N -0.562 5.562 10 C -0.299 4.299 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.281 1.281 18 S 0.099 5.901 19 H 0.069 0.931 20 H 0.072 0.928 21 H 0.065 0.935 22 H 0.132 0.868 23 H 0.135 0.865 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.393 0.607 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.120 3.483 -7.356 13.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.316 4.316 3 C -0.163 4.163 4 C -0.170 4.170 5 C -0.243 4.243 6 C -0.111 4.111 7 C 0.227 3.773 8 O -0.468 6.468 9 N -0.198 5.198 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.542 5.542 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.207 1.207 18 S 0.363 5.637 19 H 0.087 0.913 20 H 0.090 0.910 21 H 0.084 0.916 22 H 0.150 0.850 23 H 0.152 0.848 24 H 0.107 0.893 25 H 0.116 0.884 26 H 0.226 0.774 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.702 2.039 -6.712 13.644 hybrid contribution 1.172 1.255 0.455 1.776 sum -10.531 3.294 -6.257 12.685 Atomic orbital electron populations 1.20251 0.88347 1.02776 1.02108 1.24348 0.99534 0.96079 1.11663 1.19946 0.92941 0.98769 1.04635 1.19946 0.96027 0.95908 1.05164 1.23851 0.97526 0.96172 1.06785 1.20132 0.90769 1.02188 0.97994 1.19717 0.83541 0.84561 0.89484 1.90548 1.55265 1.55385 1.45603 1.41872 1.12104 1.56902 1.08952 1.19770 0.98251 1.40548 0.84307 0.87861 1.25268 0.95913 0.97099 0.99656 1.69621 1.08725 1.44720 1.31178 0.85800 0.78688 0.77865 0.82009 1.19211 1.20719 1.20724 1.84041 0.96776 1.09548 1.73293 0.91276 0.90966 0.91624 0.84975 0.84751 0.89348 0.88427 0.77360 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.38 36.01 0.37 -0.43 15 2 C -0.20 -2.88 6.51 -36.00 -0.23 -3.11 15 3 C -0.13 -1.96 10.05 -41.21 -0.41 -2.38 15 4 C -0.14 -2.36 10.05 -41.21 -0.41 -2.77 15 5 C -0.13 -2.25 5.00 -36.00 -0.18 -2.43 15 6 C -0.07 -1.25 6.19 -29.04 -0.18 -1.43 15 7 C 0.44 10.67 7.77 -10.99 -0.09 10.58 15 8 O -0.58 -16.28 15.61 5.55 0.09 -16.19 15 9 N -0.56 -14.42 5.29 -10.97 -0.06 -14.48 15 10 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 15 11 H 0.10 3.07 7.16 -52.49 -0.38 2.69 15 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 15 13 N -0.90 -24.63 13.05 55.50 0.72 -23.90 15 14 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 15 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 16 H -0.28 -6.31 7.11 56.52 0.40 -5.90 15 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 18 S 0.10 1.62 23.31 -107.50 -2.51 -0.89 15 19 H 0.07 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 22 H 0.13 1.61 8.06 -52.49 -0.42 1.18 15 23 H 0.13 2.07 8.06 -52.49 -0.42 1.65 15 24 H 0.09 1.44 8.14 -51.92 -0.42 1.01 15 25 H 0.10 1.55 8.14 -51.93 -0.42 1.12 15 26 H 0.39 9.56 7.90 -40.82 -0.32 9.24 15 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 LS Contribution 259.46 15.07 3.91 3.91 Total: -1.00 -31.71 259.46 -7.03 -38.74 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -2.79 Total: 6.69 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -1.38 Total: -10.06 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.67 Total: -38.38 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: 0.09 Total: -16.19 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.51 Total: -0.89 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.71 -7.03 -38.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307745488.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.975 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds