Wall clock time and date at job start Mon Mar 30 2020 02:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.20233 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47167 * 89.99892 * 6 5 4 8 8 O 1.21288 * 120.00754 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00007 * 180.02562 * 7 6 5 10 10 C 1.37094 * 120.00344 * 179.97438 * 9 7 6 11 11 H 1.08001 * 119.99974 * 359.97438 * 10 9 7 12 12 C 1.38953 * 120.00492 * 179.97438 * 10 9 7 13 13 N 1.31412 * 119.99588 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00223 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47224 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47004 * 120.00301 * 14 12 10 17 17 H 1.48494 * 109.47087 * 240.00017 * 14 12 10 18 18 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 19 19 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 22 22 H 1.07997 * 122.54296 * 359.95309 * 3 2 1 23 23 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 24 24 H 1.09010 * 109.46884 * 209.99886 * 6 5 4 25 25 H 1.09002 * 109.47203 * 329.99303 * 6 5 4 26 26 H 0.97005 * 119.99811 * 359.97438 * 9 7 6 27 27 H 0.97002 * 119.99918 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3861 -0.9770 0.0005 7 6 5.8564 -1.1535 1.4212 8 8 5.1187 -0.8763 2.3432 9 7 7.0973 -1.6184 1.6674 10 6 7.5254 -1.7785 2.9599 11 1 6.8685 -1.5317 3.7809 12 6 8.8045 -2.2584 3.2139 13 7 9.6040 -2.5582 2.2150 14 14 9.3880 -2.4758 4.9750 15 1 8.3068 -2.0699 5.9084 16 1 9.7345 -3.9007 5.2093 17 1 10.5865 -1.6304 5.2073 18 16 2.5210 -1.4371 0.0077 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 0.8900 0.5138 21 1 -0.3633 -0.8900 0.5139 22 1 1.8669 2.0895 -0.0007 23 1 4.3721 1.6351 0.0002 24 1 5.4136 -1.9379 -0.5135 25 1 6.0389 -0.2713 -0.5134 26 1 7.6874 -1.8398 0.9301 27 1 10.4970 -2.8929 2.3922 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307745488.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:48 Heat of formation + Delta-G solvation = -38.122174 kcal Electronic energy + Delta-G solvation = -12657.030193 eV Core-core repulsion = 10312.206045 eV Total energy + Delta-G solvation = -2344.824148 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.27379 -38.66232 -36.02625 -33.89208 -33.23190 -30.69554 -27.25979 -25.55226 -23.69267 -21.33607 -20.08593 -19.49707 -17.78958 -17.73169 -16.58327 -16.18688 -15.73397 -15.63503 -14.82477 -14.35086 -14.03548 -13.78650 -13.66556 -13.39873 -12.96432 -12.73962 -12.60272 -12.42612 -12.23386 -12.12219 -11.59721 -11.54054 -10.45438 -10.04419 -9.32750 -9.28319 -8.48969 -5.98183 0.10906 0.75321 1.13827 1.34879 1.40442 1.54747 1.87505 2.01066 2.29509 3.17854 3.28781 3.81283 4.04886 4.31034 4.44049 4.47330 4.59897 4.76041 4.78916 4.84882 5.13402 5.30981 5.39169 5.43223 5.69951 5.96996 6.56007 7.09334 7.51860 8.07333 8.68428 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.063081 B = 0.005708 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.769083 B = 4904.621248 C = 5009.829791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.185 4.185 3 C -0.148 4.148 4 C -0.141 4.141 5 C -0.164 4.164 6 C -0.056 4.056 7 C 0.440 3.560 8 O -0.625 6.625 9 N -0.571 5.571 10 C -0.335 4.335 11 H 0.078 0.922 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.993 3.007 15 H -0.274 1.274 16 H -0.270 1.270 17 H -0.269 1.269 18 S 0.074 5.926 19 H 0.091 0.909 20 H 0.090 0.910 21 H 0.069 0.931 22 H 0.162 0.838 23 H 0.142 0.858 24 H 0.108 0.892 25 H 0.123 0.877 26 H 0.398 0.602 27 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.774 3.988 -7.728 14.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.303 4.303 3 C -0.178 4.178 4 C -0.171 4.171 5 C -0.281 4.281 6 C -0.097 4.097 7 C 0.227 3.773 8 O -0.512 6.512 9 N -0.207 5.207 10 C -0.464 4.464 11 H 0.096 0.904 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.817 3.183 15 H -0.199 1.199 16 H -0.195 1.195 17 H -0.194 1.194 18 S 0.338 5.662 19 H 0.109 0.891 20 H 0.109 0.891 21 H 0.088 0.912 22 H 0.179 0.821 23 H 0.160 0.840 24 H 0.126 0.874 25 H 0.141 0.859 26 H 0.232 0.768 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.343 2.539 -7.119 14.473 hybrid contribution 1.289 1.139 0.538 1.802 sum -11.054 3.678 -6.581 13.380 Atomic orbital electron populations 1.20426 0.85439 1.03892 1.03867 1.24892 1.01300 0.94671 1.09396 1.20251 0.92182 1.00350 1.05009 1.20290 0.97399 0.95726 1.03671 1.23909 0.97566 0.97028 1.09630 1.20030 0.91715 1.04084 0.93912 1.20724 0.82437 0.82459 0.91643 1.90507 1.56199 1.56706 1.47805 1.41935 1.12926 1.57527 1.08343 1.19706 0.98939 1.42841 0.84947 0.90432 1.26049 0.95392 0.96049 1.03682 1.69676 1.09104 1.44392 1.32800 0.84873 0.78075 0.78382 0.77020 1.19900 1.19487 1.19428 1.84052 0.97227 1.11134 1.73789 0.89082 0.89100 0.91201 0.82065 0.84005 0.87429 0.85904 0.76795 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 10.38 71.24 0.74 -0.66 15 2 C -0.19 -4.98 6.51 24.59 0.16 -4.82 15 3 C -0.15 -4.08 10.05 21.22 0.21 -3.87 15 4 C -0.14 -4.54 10.05 21.22 0.21 -4.33 15 5 C -0.16 -5.79 5.00 24.59 0.12 -5.67 15 6 C -0.06 -2.01 6.19 29.10 0.18 -1.83 15 7 C 0.44 21.57 7.77 87.65 0.68 22.25 15 8 O -0.63 -35.77 15.61 -3.06 -0.05 -35.82 15 9 N -0.57 -29.82 5.29 -306.99 -1.62 -31.44 15 10 C -0.33 -19.32 9.68 84.04 0.81 -18.51 15 11 H 0.08 4.80 7.16 -2.91 -0.02 4.78 15 12 C -0.01 -0.64 5.50 84.93 0.47 -0.17 15 13 N -0.92 -49.86 13.05 21.66 0.28 -49.57 15 14 Si 0.99 43.32 29.55 68.60 2.03 45.35 15 15 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 16 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 17 H -0.27 -11.18 7.11 99.48 0.71 -10.48 15 18 S 0.07 2.37 23.31 -56.49 -1.32 1.05 15 19 H 0.09 1.30 8.14 -2.39 -0.02 1.28 15 20 H 0.09 1.35 8.14 -2.39 -0.02 1.33 15 21 H 0.07 1.23 8.14 -2.38 -0.02 1.21 15 22 H 0.16 3.41 8.06 -2.91 -0.02 3.38 15 23 H 0.14 4.21 8.06 -2.91 -0.02 4.19 15 24 H 0.11 3.42 8.14 -2.38 -0.02 3.40 15 25 H 0.12 3.74 8.14 -2.39 -0.02 3.72 15 26 H 0.40 19.59 7.90 -92.70 -0.73 18.85 15 27 H 0.28 14.06 8.31 -92.71 -0.77 13.29 15 Total: -1.00 -68.42 259.46 3.37 -65.05 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.45 Total: 22.99 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 3.59 Total: -17.60 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -1.34 Total: -81.02 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -0.05 Total: -35.82 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.32 Total: 1.05 kcal Total: -68.42 3.37 -65.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307745488.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.928 kcal (2) G-P(sol) polarization free energy of solvation -68.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds