Wall clock time and date at job start Mon Mar 30 2020 02:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31426 * 1 3 3 Si 1.86793 * 119.99758 * 2 1 4 4 H 1.48494 * 109.47389 * 270.00195 * 3 2 1 5 5 H 1.48502 * 109.47472 * 30.00919 * 3 2 1 6 6 H 1.48509 * 109.46964 * 150.00657 * 3 2 1 7 7 C 1.38804 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00415 * 359.97438 * 7 2 1 9 9 O 1.34833 * 119.99572 * 179.97438 * 7 2 1 10 10 C 1.34952 * 116.99886 * 179.97438 * 9 7 2 11 11 O 1.21733 * 120.00067 * 0.02562 * 10 9 7 12 12 C 1.41376 * 119.99783 * 180.27762 * 10 9 7 13 13 C 1.35433 * 120.00015 * 179.73003 * 12 10 9 14 14 C 1.46632 * 120.00278 * 180.02562 * 13 12 10 15 15 C 1.36610 * 123.31029 * 179.73066 * 14 13 12 16 16 S 1.70939 * 108.70117 * 179.86601 * 15 14 13 17 17 C 1.70724 * 91.22430 * 0.32984 * 16 15 14 18 18 N 1.28597 * 110.83098 * 359.80505 * 17 16 15 19 19 H 0.96997 * 120.00597 * 359.97438 * 1 2 3 20 20 H 1.08002 * 120.00419 * 359.72382 * 12 10 9 21 21 H 1.08002 * 119.99566 * 359.97438 * 13 12 10 22 22 H 1.07994 * 125.64946 * 359.97438 * 15 14 13 23 23 H 1.07999 * 124.58730 * 179.78261 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5459 1.4401 0.6999 7 6 2.0082 -1.2021 -0.0005 8 1 1.4683 -2.1374 -0.0005 9 8 3.3566 -1.2021 -0.0011 10 6 3.9692 -2.4045 -0.0010 11 8 3.3063 -3.4254 -0.0010 12 6 5.3811 -2.4784 0.0044 13 6 5.9960 -3.6851 0.0099 14 6 7.4603 -3.7618 0.0161 15 6 8.1497 -4.9412 0.0273 16 16 9.8241 -4.5972 0.0274 17 6 9.5164 -2.9179 0.0226 18 7 8.2518 -2.6848 0.0170 19 1 -0.4851 0.8400 0.0004 20 1 5.9693 -1.5727 0.0040 21 1 5.4077 -4.5909 0.0107 22 1 7.7097 -5.9274 0.0331 23 1 10.2804 -2.1547 0.0243 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308184262.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:20 Heat of formation + Delta-G solvation = -14.802717 kcal Electronic energy + Delta-G solvation = -12240.724717 eV Core-core repulsion = 9761.078682 eV Total energy + Delta-G solvation = -2479.646035 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.025 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.84298 -39.11642 -35.61128 -33.04938 -32.36320 -30.09135 -26.41660 -25.11823 -23.25069 -20.06404 -19.32635 -18.05485 -17.36095 -17.12748 -15.72297 -14.84664 -14.76696 -14.48287 -14.04325 -13.76648 -13.44122 -12.48541 -12.34152 -11.71472 -11.55668 -11.38435 -10.59528 -10.39179 -10.12275 -9.87830 -9.77119 -9.73789 -9.20723 -8.71684 -8.20475 -6.43880 -4.10936 0.36905 1.23765 1.43774 1.60813 2.98532 3.22645 3.25358 3.39617 4.06753 4.08169 4.22278 4.38937 5.04046 5.11142 5.12120 5.24951 5.59877 5.96368 6.24000 6.55952 6.84589 7.54897 7.71574 7.98804 8.62778 8.95057 9.66637 10.63574 Molecular weight = 225.02amu Principal moments of inertia in cm(-1) A = 0.059429 B = 0.005433 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.039009 B = 5152.373048 C = 5613.557567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.063 3.937 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.367 4.367 8 H 0.112 0.888 9 O -0.242 6.242 10 C 0.428 3.572 11 O -0.547 6.547 12 C -0.115 4.115 13 C -0.047 4.047 14 C 0.090 3.910 15 C -0.280 4.280 16 S 0.174 5.826 17 C 0.002 3.998 18 N -0.448 5.448 19 H 0.282 0.718 20 H 0.136 0.864 21 H 0.145 0.855 22 H 0.182 0.818 23 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.339 -6.008 0.078 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.443 4.443 8 H 0.129 0.871 9 O -0.150 6.150 10 C 0.278 3.722 11 O -0.445 6.445 12 C -0.137 4.137 13 C -0.068 4.068 14 C -0.041 4.041 15 C -0.420 4.420 16 S 0.429 5.571 17 C -0.298 4.298 18 N -0.161 5.161 19 H 0.092 0.908 20 H 0.154 0.846 21 H 0.163 0.837 22 H 0.199 0.801 23 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 20.708 -6.118 0.082 21.593 hybrid contribution -0.782 0.848 -0.019 1.154 sum 19.926 -5.270 0.064 20.611 Atomic orbital electron populations 1.69600 1.05840 1.28736 1.46151 1.24627 0.95076 0.98953 0.95489 0.86177 0.80422 0.81098 0.79130 1.19679 1.20603 1.18149 1.20774 0.76498 0.97077 1.49940 0.87056 1.83646 1.23861 1.31586 1.75880 1.19307 0.88996 0.82695 0.81173 1.90725 1.67441 1.35657 1.50716 1.21464 0.92578 0.99284 1.00380 1.21543 0.88181 0.98793 0.98325 1.19673 0.95229 0.86317 1.02912 1.26827 0.98013 1.04078 1.13077 1.82707 1.04485 1.04485 1.65467 1.28420 0.96540 0.99533 1.05267 1.66974 1.02887 1.32173 1.14072 0.90804 0.84647 0.83692 0.80065 0.78348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.65 13.96 55.49 0.77 -24.88 14 2 C 0.06 1.84 5.49 -17.52 -0.10 1.74 14 3 Si 0.91 21.76 28.62 -169.99 -4.86 16.89 14 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 14 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 14 6 H -0.26 -6.13 7.11 56.52 0.40 -5.73 14 7 C -0.37 -11.17 10.11 30.94 0.31 -10.86 14 8 H 0.11 3.69 7.09 -52.49 -0.37 3.32 14 9 O -0.24 -6.70 8.56 -22.18 -0.19 -6.89 14 10 C 0.43 10.77 7.64 31.93 0.24 11.01 14 11 O -0.55 -15.07 15.36 -19.45 -0.30 -15.37 14 12 C -0.12 -2.31 9.52 -39.39 -0.38 -2.68 14 13 C -0.05 -0.80 9.52 -37.20 -0.35 -1.15 14 14 C 0.09 1.30 6.66 -84.27 -0.56 0.74 14 15 C -0.28 -3.09 11.00 30.14 0.33 -2.76 14 16 S 0.17 1.43 22.96 -107.50 -2.47 -1.04 14 17 C 0.00 0.02 12.15 51.41 0.62 0.64 14 18 N -0.45 -6.40 9.96 -12.23 -0.12 -6.52 14 19 H 0.28 7.59 8.31 -40.82 -0.34 7.25 14 20 H 0.14 2.56 7.59 -52.49 -0.40 2.16 14 21 H 0.15 2.40 7.45 -52.49 -0.39 2.01 14 22 H 0.18 1.60 8.06 -52.49 -0.42 1.18 14 23 H 0.20 1.26 8.06 -52.49 -0.42 0.84 14 LS Contribution 239.38 15.07 3.61 3.61 Total: -1.00 -33.86 239.38 -4.58 -38.44 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: -1.14 Total: -0.93 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 0.13 Total: -3.32 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.65 Total: -31.40 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.49 Total: -22.25 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.86 Total: 16.89 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.47 Total: -1.04 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -33.86 -4.58 -38.44 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308184262.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.635 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds