Wall clock time and date at job start Mon Mar 30 2020 02:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31426 * 1 3 3 Si 1.86793 * 119.99758 * 2 1 4 4 H 1.48494 * 109.47389 * 270.00195 * 3 2 1 5 5 H 1.48502 * 109.47472 * 30.00919 * 3 2 1 6 6 H 1.48509 * 109.46964 * 150.00657 * 3 2 1 7 7 C 1.38804 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00415 * 359.97438 * 7 2 1 9 9 O 1.34833 * 119.99572 * 179.97438 * 7 2 1 10 10 C 1.34952 * 116.99886 * 179.97438 * 9 7 2 11 11 O 1.21733 * 120.00067 * 0.02562 * 10 9 7 12 12 C 1.41376 * 119.99783 * 180.27762 * 10 9 7 13 13 C 1.35433 * 120.00015 * 179.73003 * 12 10 9 14 14 C 1.46632 * 120.00278 * 180.02562 * 13 12 10 15 15 C 1.36610 * 123.31029 * 179.73066 * 14 13 12 16 16 S 1.70939 * 108.70117 * 179.86601 * 15 14 13 17 17 C 1.70724 * 91.22430 * 0.32984 * 16 15 14 18 18 N 1.28597 * 110.83098 * 359.80505 * 17 16 15 19 19 H 0.96997 * 120.00597 * 359.97438 * 1 2 3 20 20 H 1.08002 * 120.00419 * 359.72382 * 12 10 9 21 21 H 1.08002 * 119.99566 * 359.97438 * 13 12 10 22 22 H 1.07994 * 125.64946 * 359.97438 * 15 14 13 23 23 H 1.07999 * 124.58730 * 179.78261 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5459 1.4401 0.6999 7 6 2.0082 -1.2021 -0.0005 8 1 1.4683 -2.1374 -0.0005 9 8 3.3566 -1.2021 -0.0011 10 6 3.9692 -2.4045 -0.0010 11 8 3.3063 -3.4254 -0.0010 12 6 5.3811 -2.4784 0.0044 13 6 5.9960 -3.6851 0.0099 14 6 7.4603 -3.7618 0.0161 15 6 8.1497 -4.9412 0.0273 16 16 9.8241 -4.5972 0.0274 17 6 9.5164 -2.9179 0.0226 18 7 8.2518 -2.6848 0.0170 19 1 -0.4851 0.8400 0.0004 20 1 5.9693 -1.5727 0.0040 21 1 5.4077 -4.5909 0.0107 22 1 7.7097 -5.9274 0.0331 23 1 10.2804 -2.1547 0.0243 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308184262.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:19 Heat of formation + Delta-G solvation = -39.099075 kcal Electronic energy + Delta-G solvation = -12241.778286 eV Core-core repulsion = 9761.078682 eV Total energy + Delta-G solvation = -2480.699604 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.025 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.33247 -40.63422 -37.65466 -34.61654 -34.45863 -31.21871 -28.22287 -26.39869 -24.72637 -21.58964 -20.48970 -20.18378 -18.91841 -18.52254 -17.22354 -16.74764 -16.38942 -15.88531 -15.54109 -15.05441 -14.46793 -14.30104 -14.20017 -13.41254 -13.18444 -12.59868 -12.46914 -12.31546 -11.89048 -11.46216 -11.29190 -10.86994 -10.70906 -10.59831 -9.32250 -8.59853 -6.42636 -0.70913 0.23155 0.46850 0.76220 1.31572 1.35557 1.53579 1.75272 2.25475 2.34678 2.56578 2.92066 3.22513 4.05772 4.10527 4.21182 4.39884 4.43867 4.97062 5.14831 5.24170 5.46345 5.85609 6.46568 6.67898 6.76542 7.52949 8.52852 Molecular weight = 225.02amu Principal moments of inertia in cm(-1) A = 0.059429 B = 0.005433 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.039009 B = 5152.373048 C = 5613.557567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.018 3.982 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.259 1.259 6 H -0.256 1.256 7 C -0.407 4.407 8 H 0.060 0.940 9 O -0.254 6.254 10 C 0.443 3.557 11 O -0.581 6.581 12 C -0.171 4.171 13 C 0.019 3.981 14 C 0.036 3.964 15 C -0.265 4.265 16 S 0.282 5.718 17 C -0.011 4.011 18 N -0.489 5.489 19 H 0.292 0.708 20 H 0.145 0.855 21 H 0.148 0.852 22 H 0.205 0.795 23 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.686 -6.374 0.083 25.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.183 4.183 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.183 1.183 6 H -0.180 1.180 7 C -0.483 4.483 8 H 0.078 0.922 9 O -0.164 6.164 10 C 0.295 3.705 11 O -0.480 6.480 12 C -0.192 4.192 13 C -0.002 4.002 14 C -0.096 4.096 15 C -0.406 4.406 16 S 0.538 5.462 17 C -0.309 4.309 18 N -0.203 5.203 19 H 0.102 0.898 20 H 0.163 0.837 21 H 0.165 0.835 22 H 0.222 0.778 23 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 25.074 -6.510 0.085 25.906 hybrid contribution -1.676 0.492 -0.019 1.746 sum 23.399 -6.018 0.066 24.160 Atomic orbital electron populations 1.69681 1.07477 1.30450 1.47326 1.25589 0.96020 1.02669 0.94026 0.85084 0.78870 0.75821 0.79972 1.18238 1.18280 1.18016 1.20412 0.77728 0.96037 1.54103 0.92171 1.83651 1.22273 1.32550 1.77893 1.20321 0.90806 0.81611 0.77802 1.90689 1.68802 1.36581 1.51948 1.21161 0.89262 1.01101 1.07722 1.21875 0.90439 0.97546 0.90368 1.19445 0.93904 0.88097 1.08129 1.27379 1.00660 1.04132 1.08451 1.82496 1.00402 1.01580 1.61750 1.29017 0.95906 1.02164 1.03809 1.66927 1.04633 1.32981 1.15768 0.89812 0.83700 0.83481 0.77808 0.75197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.29 13.96 21.63 0.30 -55.98 14 2 C 0.02 1.06 5.49 84.89 0.47 1.53 14 3 Si 0.98 45.66 28.62 68.60 1.96 47.62 14 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 14 5 H -0.26 -10.96 7.11 99.48 0.71 -10.26 14 6 H -0.26 -11.74 7.11 99.48 0.71 -11.03 14 7 C -0.41 -26.41 10.11 67.96 0.69 -25.72 14 8 H 0.06 4.38 7.09 -2.91 -0.02 4.36 14 9 O -0.25 -14.84 8.56 9.29 0.08 -14.76 14 10 C 0.44 23.40 7.64 68.59 0.52 23.92 14 11 O -0.58 -33.83 15.36 19.07 0.29 -33.54 14 12 C -0.17 -6.98 9.52 22.39 0.21 -6.77 14 13 C 0.02 0.63 9.52 23.81 0.23 0.86 14 14 C 0.04 0.95 6.66 40.68 0.27 1.22 14 15 C -0.26 -4.69 11.00 67.44 0.74 -3.95 14 16 S 0.28 3.08 22.96 -56.49 -1.30 1.78 14 17 C -0.01 -0.17 12.15 130.72 1.59 1.42 14 18 N -0.49 -12.75 9.96 -192.59 -1.92 -14.67 14 19 H 0.29 16.15 8.31 -92.71 -0.77 15.38 14 20 H 0.15 5.59 7.59 -2.91 -0.02 5.57 14 21 H 0.15 4.75 7.45 -2.91 -0.02 4.73 14 22 H 0.20 2.58 8.06 -2.91 -0.02 2.55 14 23 H 0.23 1.85 8.06 -2.91 -0.02 1.83 14 Total: -1.00 -79.92 239.38 5.38 -74.54 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: 1.24 Total: 2.51 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 4.72 Total: -7.50 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -1.62 Total: -70.65 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: 0.37 Total: -48.30 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.96 Total: 47.62 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.30 Total: 1.78 kcal Total: -79.92 5.38 -74.54 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308184262.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.438 kcal (2) G-P(sol) polarization free energy of solvation -79.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds