Wall clock time and date at job start Mon Mar 30 2020 02:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31428 * 1 3 3 Si 1.86802 * 120.00042 * 2 1 4 4 H 1.48498 * 109.47111 * 240.00061 * 3 2 1 5 5 H 1.48502 * 109.47029 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.46871 * 120.00075 * 3 2 1 7 7 C 1.38805 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99978 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34947 * 117.00352 * 180.02562 * 9 7 2 11 11 O 1.21737 * 119.99589 * 359.97438 * 10 9 7 12 12 C 1.41370 * 120.00183 * 179.97438 * 10 9 7 13 13 C 1.35429 * 120.00123 * 231.87494 * 12 10 9 14 14 C 1.46635 * 119.99958 * 354.15162 * 13 12 10 15 15 C 1.36603 * 123.31525 * 227.75537 * 14 13 12 16 16 S 1.70934 * 108.70770 * 179.97438 * 15 14 13 17 17 C 1.70729 * 91.22349 * 359.97438 * 16 15 14 18 18 N 1.28603 * 110.82727 * 359.75078 * 17 16 15 19 19 H 0.97001 * 120.00029 * 359.97438 * 1 2 3 20 20 H 1.08001 * 119.99799 * 51.87544 * 12 10 9 21 21 H 1.08000 * 120.00293 * 173.87489 * 13 12 10 22 22 H 1.08008 * 125.64401 * 359.97372 * 15 14 13 23 23 H 1.07998 * 124.58604 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1020 1.6964 -1.2125 5 1 1.2833 2.7465 -0.0006 6 1 3.1020 1.6963 1.2124 7 6 2.0082 -1.2021 -0.0005 8 1 3.0883 -1.2022 -0.0010 9 8 1.3341 -2.3698 -0.0016 10 6 2.0690 -3.5016 -0.0015 11 8 3.2847 -3.4379 -0.0010 12 6 1.4272 -4.7612 -0.0020 13 6 1.7645 -5.6935 0.9205 14 6 2.8819 -5.4468 1.8375 15 6 3.8686 -6.3596 2.0806 16 16 4.9726 -5.6887 3.1999 17 6 4.0682 -4.2429 3.2810 18 7 3.0386 -4.3039 2.5127 19 1 -0.4850 0.8401 0.0004 20 1 0.6678 -4.9800 -0.7382 21 1 1.2078 -6.6168 0.9839 22 1 3.9394 -7.3426 1.6387 23 1 4.3277 -3.3909 3.8918 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308184263.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:22 Heat of formation + Delta-G solvation = -8.323491 kcal Electronic energy + Delta-G solvation = -12844.782501 eV Core-core repulsion = 10365.417427 eV Total energy + Delta-G solvation = -2479.365074 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.025 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.61117 -38.51589 -35.17675 -32.95609 -32.01564 -29.62194 -25.84301 -24.85434 -23.21195 -20.28112 -18.83347 -17.68653 -17.45019 -16.52143 -15.36513 -14.79159 -14.39693 -14.29509 -13.83882 -13.06863 -12.97380 -12.84771 -12.10826 -11.50578 -11.22682 -11.09075 -10.42434 -10.30076 -9.88804 -9.52759 -9.31003 -9.26497 -8.81024 -8.46894 -8.07275 -6.31870 -3.94585 0.93025 1.70714 1.81326 2.11988 3.18372 3.23214 3.27705 3.29946 3.85250 4.11895 4.59958 4.95906 5.22439 5.27231 5.48201 5.57990 5.80199 6.20361 6.51195 6.58828 7.10343 7.49434 8.06419 8.07487 8.85832 9.16876 9.98083 10.86464 Molecular weight = 225.02amu Principal moments of inertia in cm(-1) A = 0.038966 B = 0.008002 C = 0.007044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.406586 B = 3498.267624 C = 3974.193112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.367 4.367 8 H 0.092 0.908 9 O -0.210 6.210 10 C 0.435 3.565 11 O -0.549 6.549 12 C -0.109 4.109 13 C -0.063 4.063 14 C 0.100 3.900 15 C -0.287 4.287 16 S 0.148 5.852 17 C 0.013 3.987 18 N -0.423 5.423 19 H 0.269 0.731 20 H 0.141 0.859 21 H 0.144 0.856 22 H 0.175 0.825 23 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.834 -11.027 5.465 13.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.444 4.444 8 H 0.110 0.890 9 O -0.117 6.117 10 C 0.283 3.717 11 O -0.447 6.447 12 C -0.130 4.130 13 C -0.083 4.083 14 C -0.032 4.032 15 C -0.426 4.426 16 S 0.402 5.598 17 C -0.287 4.287 18 N -0.134 5.134 19 H 0.078 0.922 20 H 0.159 0.841 21 H 0.161 0.839 22 H 0.192 0.808 23 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 6.507 -10.666 5.935 13.832 hybrid contribution -0.366 0.702 -0.699 1.056 sum 6.141 -9.965 5.236 12.823 Atomic orbital electron populations 1.69984 1.05978 1.27579 1.46783 1.25322 0.95776 0.98751 0.96614 0.85765 0.78619 0.79657 0.79224 1.19606 1.20422 1.19586 1.21119 0.92264 0.80047 1.50943 0.88992 1.84030 1.39002 1.13328 1.75354 1.19512 0.86597 0.86307 0.79281 1.90694 1.15082 1.88202 1.50762 1.21627 0.99499 0.92340 0.99494 1.21420 0.94252 0.99193 0.93483 1.19641 0.96895 0.88123 0.98552 1.26542 1.01020 1.06462 1.08603 1.82441 1.28454 1.10920 1.37953 1.28333 0.95055 1.02389 1.02950 1.67042 1.19608 1.20979 1.05786 0.92161 0.84122 0.83859 0.80784 0.78836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.67 55.49 0.76 -25.55 14 2 C 0.04 1.14 5.50 -17.51 -0.10 1.04 14 3 Si 0.94 22.11 29.55 -169.99 -5.02 17.08 14 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 14 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 14 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 14 7 C -0.37 -11.37 9.65 30.94 0.30 -11.07 14 8 H 0.09 2.87 6.86 -52.48 -0.36 2.51 14 9 O -0.21 -6.39 9.73 -22.17 -0.22 -6.60 14 10 C 0.43 11.51 6.20 31.92 0.20 11.71 14 11 O -0.55 -15.57 14.32 -19.45 -0.28 -15.85 14 12 C -0.11 -2.20 9.91 -39.39 -0.39 -2.59 14 13 C -0.06 -1.07 10.07 -37.20 -0.37 -1.45 14 14 C 0.10 1.87 5.30 -84.27 -0.45 1.43 14 15 C -0.29 -4.24 11.00 30.14 0.33 -3.91 14 16 S 0.15 1.93 22.96 -107.50 -2.47 -0.54 14 17 C 0.01 0.21 12.15 51.41 0.62 0.84 14 18 N -0.42 -8.86 8.71 -12.22 -0.11 -8.97 14 19 H 0.27 7.48 8.31 -40.82 -0.34 7.14 14 20 H 0.14 2.33 8.06 -52.49 -0.42 1.90 14 21 H 0.14 1.74 8.06 -52.49 -0.42 1.32 14 22 H 0.17 2.00 8.06 -52.48 -0.42 1.58 14 23 H 0.19 2.66 8.06 -52.49 -0.42 2.24 14 LS Contribution 237.43 15.07 3.58 3.58 Total: -1.00 -36.82 237.43 -4.80 -41.62 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -1.19 Total: -0.76 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 0.15 Total: -4.01 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.65 Total: -34.52 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.49 Total: -22.46 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.47 Total: -0.54 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -36.82 -4.80 -41.62 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308184263.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.293 kcal (2) G-P(sol) polarization free energy of solvation -36.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds