Wall clock time and date at job start Mon Mar 30 2020 02:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31428 * 1 3 3 Si 1.86802 * 120.00042 * 2 1 4 4 H 1.48498 * 109.47111 * 240.00061 * 3 2 1 5 5 H 1.48502 * 109.47029 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.46871 * 120.00075 * 3 2 1 7 7 C 1.38805 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99978 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34947 * 117.00352 * 180.02562 * 9 7 2 11 11 O 1.21737 * 119.99589 * 359.97438 * 10 9 7 12 12 C 1.41370 * 120.00183 * 179.97438 * 10 9 7 13 13 C 1.35429 * 120.00123 * 231.87494 * 12 10 9 14 14 C 1.46635 * 119.99958 * 354.15162 * 13 12 10 15 15 C 1.36603 * 123.31525 * 227.75537 * 14 13 12 16 16 S 1.70934 * 108.70770 * 179.97438 * 15 14 13 17 17 C 1.70729 * 91.22349 * 359.97438 * 16 15 14 18 18 N 1.28603 * 110.82727 * 359.75078 * 17 16 15 19 19 H 0.97001 * 120.00029 * 359.97438 * 1 2 3 20 20 H 1.08001 * 119.99799 * 51.87544 * 12 10 9 21 21 H 1.08000 * 120.00293 * 173.87489 * 13 12 10 22 22 H 1.08008 * 125.64401 * 359.97372 * 15 14 13 23 23 H 1.07998 * 124.58604 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1020 1.6964 -1.2125 5 1 1.2833 2.7465 -0.0006 6 1 3.1020 1.6963 1.2124 7 6 2.0082 -1.2021 -0.0005 8 1 3.0883 -1.2022 -0.0010 9 8 1.3341 -2.3698 -0.0016 10 6 2.0690 -3.5016 -0.0015 11 8 3.2847 -3.4379 -0.0010 12 6 1.4272 -4.7612 -0.0020 13 6 1.7645 -5.6935 0.9205 14 6 2.8819 -5.4468 1.8375 15 6 3.8686 -6.3596 2.0806 16 16 4.9726 -5.6887 3.1999 17 6 4.0682 -4.2429 3.2810 18 7 3.0386 -4.3039 2.5127 19 1 -0.4850 0.8401 0.0004 20 1 0.6678 -4.9800 -0.7382 21 1 1.2078 -6.6168 0.9839 22 1 3.9394 -7.3426 1.6387 23 1 4.3277 -3.3909 3.8918 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308184263.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:21 Heat of formation + Delta-G solvation = -35.046051 kcal Electronic energy + Delta-G solvation = -12845.941278 eV Core-core repulsion = 10365.417427 eV Total energy + Delta-G solvation = -2480.523852 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.025 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.25407 -40.24790 -37.24730 -34.53264 -34.21143 -30.95817 -27.82593 -26.31764 -24.88401 -21.88858 -20.29424 -19.82808 -19.07113 -18.11516 -17.11684 -16.40044 -16.28297 -16.08720 -15.41772 -14.69975 -14.40754 -14.15842 -13.81063 -13.47278 -13.06416 -12.49041 -12.33233 -12.18348 -12.02113 -11.24229 -10.74323 -10.67109 -10.52723 -10.47656 -9.34122 -8.51257 -6.27749 -0.31776 0.41180 0.57774 0.88699 1.30972 1.36930 1.47916 1.75569 2.09868 2.22128 2.99505 3.18971 3.44189 4.02204 4.33368 4.40596 4.50915 4.72761 5.00493 5.15551 5.18795 5.50586 5.87255 6.73929 6.84992 6.93500 7.83215 8.70107 Molecular weight = 225.02amu Principal moments of inertia in cm(-1) A = 0.038966 B = 0.008002 C = 0.007044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.406586 B = 3498.267624 C = 3974.193112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.009 4.009 3 Si 1.017 2.983 4 H -0.261 1.261 5 H -0.258 1.258 6 H -0.264 1.264 7 C -0.408 4.408 8 H 0.074 0.926 9 O -0.248 6.248 10 C 0.443 3.557 11 O -0.576 6.576 12 C -0.169 4.169 13 C -0.011 4.011 14 C 0.039 3.961 15 C -0.273 4.273 16 S 0.255 5.745 17 C -0.028 4.028 18 N -0.488 5.488 19 H 0.277 0.723 20 H 0.173 0.827 21 H 0.202 0.798 22 H 0.213 0.787 23 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.072 -12.630 6.157 15.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.208 4.208 3 Si 0.836 3.164 4 H -0.186 1.186 5 H -0.181 1.181 6 H -0.188 1.188 7 C -0.484 4.484 8 H 0.092 0.908 9 O -0.157 6.157 10 C 0.293 3.707 11 O -0.475 6.475 12 C -0.190 4.190 13 C -0.031 4.031 14 C -0.094 4.094 15 C -0.413 4.413 16 S 0.510 5.490 17 C -0.325 4.325 18 N -0.201 5.201 19 H 0.087 0.913 20 H 0.190 0.810 21 H 0.219 0.781 22 H 0.230 0.770 23 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 7.758 -12.295 6.641 15.983 hybrid contribution -0.567 0.904 -0.763 1.312 sum 7.191 -11.391 5.878 14.698 Atomic orbital electron populations 1.70078 1.07662 1.29213 1.47541 1.26547 0.96905 1.02299 0.95073 0.84707 0.77611 0.74453 0.79652 1.18590 1.18130 1.18816 1.21248 0.91804 0.81444 1.53932 0.90789 1.84048 1.40142 1.14314 1.77214 1.20613 0.86516 0.87222 0.76319 1.90628 1.16581 1.88777 1.51484 1.21733 1.03118 0.90460 1.03640 1.22206 0.91695 0.99378 0.89794 1.20059 0.99375 0.88992 1.00924 1.27148 0.99818 1.07132 1.07243 1.82031 1.25126 1.06835 1.34977 1.28643 0.95599 1.05113 1.03182 1.67031 1.22229 1.23084 1.07797 0.91341 0.81021 0.78126 0.76985 0.77811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.70 13.67 21.63 0.30 -56.41 14 2 C -0.01 -0.55 5.50 84.89 0.47 -0.08 14 3 Si 1.02 46.01 29.55 68.60 2.03 48.04 14 4 H -0.26 -11.32 7.11 99.48 0.71 -10.62 14 5 H -0.26 -10.64 7.11 99.48 0.71 -9.93 14 6 H -0.26 -11.50 7.11 99.48 0.71 -10.80 14 7 C -0.41 -26.56 9.65 67.96 0.66 -25.91 14 8 H 0.07 4.91 6.86 -2.91 -0.02 4.89 14 9 O -0.25 -15.94 9.73 9.34 0.09 -15.85 14 10 C 0.44 24.43 6.20 68.59 0.43 24.85 14 11 O -0.58 -33.95 14.32 19.06 0.27 -33.68 14 12 C -0.17 -6.84 9.91 22.39 0.22 -6.62 14 13 C -0.01 -0.35 10.07 23.81 0.24 -0.11 14 14 C 0.04 1.39 5.30 40.67 0.22 1.61 14 15 C -0.27 -7.08 11.00 67.44 0.74 -6.34 14 16 S 0.26 5.81 22.96 -56.49 -1.30 4.52 14 17 C -0.03 -0.91 12.15 130.72 1.59 0.68 14 18 N -0.49 -20.66 8.71 -192.59 -1.68 -22.34 14 19 H 0.28 15.70 8.31 -92.71 -0.77 14.93 14 20 H 0.17 5.61 8.06 -2.91 -0.02 5.58 14 21 H 0.20 3.91 8.06 -2.91 -0.02 3.88 14 22 H 0.21 3.68 8.06 -2.91 -0.02 3.65 14 23 H 0.21 5.72 8.06 -2.91 -0.02 5.70 14 Total: -1.00 -85.86 237.43 5.50 -80.35 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.24 Total: 7.29 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 4.55 Total: -11.92 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -1.38 Total: -78.74 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: 0.36 Total: -49.53 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Atomic # 16 Polarization: 5.81 SS G_CDS: -1.30 Total: 4.52 kcal Total: -85.86 5.50 -80.35 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308184263.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.307 kcal (2) G-P(sol) polarization free energy of solvation -85.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds