Wall clock time and date at job start Mon Mar 30 2020 02:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86802 * 119.99970 * 2 1 4 4 H 1.48505 * 109.46805 * 240.00039 * 3 2 1 5 5 H 1.48501 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47474 * 119.99936 * 3 2 1 7 7 C 1.38814 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00442 * 180.02562 * 7 2 1 9 9 O 1.34818 * 119.99624 * 359.97438 * 7 2 1 10 10 C 1.34964 * 116.99771 * 180.02562 * 9 7 2 11 11 O 1.21754 * 120.00230 * 359.97438 * 10 9 7 12 12 C 1.41202 * 119.99905 * 179.72734 * 10 9 7 13 13 C 1.35774 * 119.99864 * 179.97438 * 12 10 9 14 14 C 1.41605 * 120.00013 * 179.97438 * 13 12 10 15 15 C 1.37167 * 126.19576 * 180.02562 * 14 13 12 16 16 N 1.30929 * 113.83199 * 179.97438 * 15 14 13 17 17 C 1.29373 * 117.49862 * 359.97438 * 16 15 14 18 18 S 1.70912 * 110.66573 * 359.75264 * 17 16 15 19 19 H 0.97002 * 120.00066 * 0.02562 * 1 2 3 20 20 H 1.07998 * 120.00344 * 359.97438 * 12 10 9 21 21 H 1.08004 * 120.00247 * 0.02562 * 13 12 10 22 22 H 1.07995 * 123.08414 * 359.97438 * 15 14 13 23 23 H 1.08003 * 124.66628 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2832 2.7465 -0.0006 6 1 3.1020 1.6965 1.2125 7 6 2.0083 -1.2021 0.0005 8 1 3.0883 -1.2022 0.0010 9 8 1.3342 -2.3697 0.0016 10 6 2.0693 -3.5016 0.0026 11 8 3.2852 -3.4379 0.0021 12 6 1.4282 -4.7597 0.0095 13 6 2.1678 -5.8984 0.0100 14 6 1.5249 -7.1601 0.0175 15 6 2.1435 -8.3843 0.0194 16 7 1.3131 -9.3966 0.0273 17 6 0.0471 -9.1306 0.0328 18 16 -0.2144 -7.4416 0.0349 19 1 -0.4850 0.8401 -0.0004 20 1 0.3498 -4.8163 0.0145 21 1 3.2463 -5.8419 0.0055 22 1 3.2170 -8.5024 0.0148 23 1 -0.7367 -9.8736 0.0392 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308186750.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:44 Heat of formation + Delta-G solvation = -18.299700 kcal Electronic energy + Delta-G solvation = -12185.638117 eV Core-core repulsion = 9705.840442 eV Total energy + Delta-G solvation = -2479.797675 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.025 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.57330 -39.07022 -35.69227 -33.88906 -32.31997 -29.47096 -26.40221 -25.21003 -22.82212 -20.25009 -19.57431 -17.89839 -17.42369 -17.07028 -15.48563 -14.64074 -14.52611 -14.49503 -14.35017 -13.96691 -13.37268 -12.83124 -12.00032 -11.69471 -11.40478 -11.16169 -10.85112 -10.54027 -10.40065 -9.97075 -9.74837 -9.18478 -9.12753 -8.71740 -8.09135 -6.59370 -4.14792 0.07118 1.31133 1.72235 1.91773 2.93375 3.11808 3.13426 3.16111 3.88207 4.06692 4.30815 4.61466 5.04158 5.15127 5.23649 5.47006 5.51770 6.10387 6.25055 6.49856 6.94400 7.25974 7.64706 7.80609 8.64216 8.88396 9.72367 10.57394 Molecular weight = 225.02amu Principal moments of inertia in cm(-1) A = 0.073943 B = 0.005296 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.577175 B = 5285.680497 C = 5654.398625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.038 3.962 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.362 4.362 8 H 0.100 0.900 9 O -0.202 6.202 10 C 0.412 3.588 11 O -0.562 6.562 12 C -0.128 4.128 13 C -0.044 4.044 14 C -0.182 4.182 15 C 0.042 3.958 16 N -0.470 5.470 17 C -0.009 4.009 18 S 0.155 5.845 19 H 0.274 0.726 20 H 0.124 0.876 21 H 0.149 0.851 22 H 0.181 0.819 23 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.869 -11.942 0.062 12.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.168 4.168 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.118 0.882 9 O -0.109 6.109 10 C 0.263 3.737 11 O -0.464 6.464 12 C -0.151 4.151 13 C -0.065 4.065 14 C -0.304 4.304 15 C -0.114 4.114 16 N -0.183 5.183 17 C -0.303 4.303 18 S 0.410 5.590 19 H 0.084 0.916 20 H 0.142 0.858 21 H 0.166 0.834 22 H 0.198 0.802 23 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -2.600 -11.765 0.076 12.049 hybrid contribution 1.162 0.617 -0.011 1.316 sum -1.438 -11.148 0.064 11.241 Atomic orbital electron populations 1.69976 1.06242 1.28417 1.43856 1.25488 0.95898 0.99285 0.96087 0.85652 0.78678 0.78799 0.79604 1.19221 1.20164 1.19217 1.21386 0.92770 0.79976 1.49698 0.88198 1.83986 1.39487 1.13694 1.73731 1.19316 0.86393 0.86016 0.81933 1.90701 1.15025 1.88186 1.52479 1.21507 1.00125 0.91341 1.02087 1.20353 1.00556 0.87835 0.97782 1.24018 0.95686 0.98811 1.11852 1.22567 1.00967 0.85168 1.02662 1.65989 1.01983 1.35390 1.14911 1.28429 0.96807 0.98942 1.06116 1.84164 1.05119 1.04145 1.65547 0.91560 0.85807 0.83351 0.80189 0.78674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.20 13.67 55.49 0.76 -23.44 14 2 C 0.04 1.05 5.50 -17.52 -0.10 0.96 14 3 Si 0.95 20.61 29.55 -169.99 -5.02 15.58 14 4 H -0.27 -5.68 7.11 56.52 0.40 -5.27 14 5 H -0.28 -5.74 7.11 56.52 0.40 -5.33 14 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 14 7 C -0.36 -10.55 9.65 30.95 0.30 -10.26 14 8 H 0.10 2.90 6.86 -52.49 -0.36 2.54 14 9 O -0.20 -5.81 9.73 -22.18 -0.22 -6.02 14 10 C 0.41 10.37 7.63 31.86 0.24 10.61 14 11 O -0.56 -15.21 15.36 -19.47 -0.30 -15.51 14 12 C -0.13 -2.51 9.45 -39.34 -0.37 -2.88 14 13 C -0.04 -0.73 9.39 -39.18 -0.37 -1.09 14 14 C -0.18 -2.60 6.26 -38.69 -0.24 -2.84 14 15 C 0.04 0.55 11.39 -18.33 -0.21 0.34 14 16 N -0.47 -6.22 10.50 -15.04 -0.16 -6.38 14 17 C -0.01 -0.10 12.20 51.73 0.63 0.53 14 18 S 0.16 1.87 21.97 -107.50 -2.36 -0.49 14 19 H 0.27 7.11 8.31 -40.82 -0.34 6.77 14 20 H 0.12 2.22 7.10 -52.49 -0.37 1.85 14 21 H 0.15 2.45 7.45 -52.48 -0.39 2.06 14 22 H 0.18 1.95 8.06 -52.49 -0.42 1.53 14 23 H 0.20 1.42 8.06 -52.48 -0.42 0.99 14 LS Contribution 239.41 15.07 3.61 3.61 Total: -1.00 -32.52 239.41 -4.91 -37.43 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -1.10 Total: -0.14 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -0.11 Total: -4.63 kcal Atomic # 7 Polarization: -30.42 SS G_CDS: 0.60 Total: -29.82 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.51 Total: -21.53 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.36 Total: -0.49 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -32.52 -4.91 -37.43 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308186750.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.126 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds