Wall clock time and date at job start Mon Mar 30 2020 02:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86802 * 119.99970 * 2 1 4 4 H 1.48505 * 109.46805 * 240.00039 * 3 2 1 5 5 H 1.48501 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47474 * 119.99936 * 3 2 1 7 7 C 1.38814 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00442 * 180.02562 * 7 2 1 9 9 O 1.34818 * 119.99624 * 359.97438 * 7 2 1 10 10 C 1.34964 * 116.99771 * 180.02562 * 9 7 2 11 11 O 1.21754 * 120.00230 * 359.97438 * 10 9 7 12 12 C 1.41202 * 119.99905 * 179.72734 * 10 9 7 13 13 C 1.35774 * 119.99864 * 179.97438 * 12 10 9 14 14 C 1.41605 * 120.00013 * 179.97438 * 13 12 10 15 15 C 1.37167 * 126.19576 * 180.02562 * 14 13 12 16 16 N 1.30929 * 113.83199 * 179.97438 * 15 14 13 17 17 C 1.29373 * 117.49862 * 359.97438 * 16 15 14 18 18 S 1.70912 * 110.66573 * 359.75264 * 17 16 15 19 19 H 0.97002 * 120.00066 * 0.02562 * 1 2 3 20 20 H 1.07998 * 120.00344 * 359.97438 * 12 10 9 21 21 H 1.08004 * 120.00247 * 0.02562 * 13 12 10 22 22 H 1.07995 * 123.08414 * 359.97438 * 15 14 13 23 23 H 1.08003 * 124.66628 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2832 2.7465 -0.0006 6 1 3.1020 1.6965 1.2125 7 6 2.0083 -1.2021 0.0005 8 1 3.0883 -1.2022 0.0010 9 8 1.3342 -2.3697 0.0016 10 6 2.0693 -3.5016 0.0026 11 8 3.2852 -3.4379 0.0021 12 6 1.4282 -4.7597 0.0095 13 6 2.1678 -5.8984 0.0100 14 6 1.5249 -7.1601 0.0175 15 6 2.1435 -8.3843 0.0194 16 7 1.3131 -9.3966 0.0273 17 6 0.0471 -9.1306 0.0328 18 16 -0.2144 -7.4416 0.0349 19 1 -0.4850 0.8401 -0.0004 20 1 0.3498 -4.8163 0.0145 21 1 3.2463 -5.8419 0.0055 22 1 3.2170 -8.5024 0.0148 23 1 -0.7367 -9.8736 0.0392 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308186750.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:44 Heat of formation + Delta-G solvation = -40.674090 kcal Electronic energy + Delta-G solvation = -12186.608343 eV Core-core repulsion = 9705.840442 eV Total energy + Delta-G solvation = -2480.767902 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.025 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.13998 -40.56471 -37.59897 -35.43906 -34.34406 -30.79166 -27.98875 -26.75759 -24.34323 -21.34869 -21.19822 -19.94124 -18.77221 -18.63091 -17.10153 -16.58284 -16.25505 -16.09309 -15.49947 -14.95169 -14.75966 -14.47045 -13.66141 -13.35768 -13.27633 -12.46209 -12.30971 -12.15746 -12.04960 -11.97450 -11.24173 -10.72943 -10.70499 -10.19195 -9.39839 -8.58448 -6.33397 -1.11284 0.28380 0.58313 0.71330 1.34633 1.42970 1.51246 1.80064 2.13554 2.29060 2.89705 2.99751 3.40880 3.99264 4.08854 4.12100 4.36695 4.60279 5.00171 5.08880 5.15216 5.34787 5.79013 6.60405 6.61663 6.85760 7.71116 8.62139 Molecular weight = 225.02amu Principal moments of inertia in cm(-1) A = 0.073943 B = 0.005296 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.577175 B = 5285.680497 C = 5654.398625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.005 4.005 3 Si 1.022 2.978 4 H -0.260 1.260 5 H -0.258 1.258 6 H -0.260 1.260 7 C -0.417 4.417 8 H 0.085 0.915 9 O -0.240 6.240 10 C 0.427 3.573 11 O -0.589 6.589 12 C -0.194 4.194 13 C 0.034 3.966 14 C -0.246 4.246 15 C 0.084 3.916 16 N -0.501 5.501 17 C 0.031 3.969 18 S 0.179 5.821 19 H 0.281 0.719 20 H 0.136 0.864 21 H 0.149 0.851 22 H 0.203 0.797 23 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.998 -14.611 0.078 14.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.206 4.206 3 Si 0.840 3.160 4 H -0.185 1.185 5 H -0.182 1.182 6 H -0.185 1.185 7 C -0.493 4.493 8 H 0.103 0.897 9 O -0.148 6.148 10 C 0.279 3.721 11 O -0.491 6.491 12 C -0.215 4.215 13 C 0.013 3.987 14 C -0.367 4.367 15 C -0.073 4.073 16 N -0.214 5.214 17 C -0.262 4.262 18 S 0.435 5.565 19 H 0.091 0.909 20 H 0.154 0.846 21 H 0.167 0.833 22 H 0.220 0.780 23 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -2.748 -14.448 0.091 14.707 hybrid contribution 1.197 0.686 -0.014 1.380 sum -1.550 -13.762 0.077 13.849 Atomic orbital electron populations 1.70059 1.07810 1.29748 1.45894 1.26650 0.96926 1.02524 0.94527 0.84637 0.77597 0.73914 0.79900 1.18474 1.18187 1.18466 1.21497 0.92425 0.81180 1.54184 0.89722 1.84006 1.40168 1.14424 1.76225 1.20271 0.86220 0.86996 0.78568 1.90647 1.16363 1.88852 1.53264 1.21220 1.00857 0.89471 1.09986 1.20484 1.00458 0.88060 0.89689 1.23872 0.97438 0.98010 1.17416 1.23067 1.02256 0.84528 0.97480 1.66183 1.02816 1.35173 1.17200 1.29350 0.97145 0.99353 1.00359 1.84299 1.03332 1.04674 1.64194 0.90928 0.84623 0.83329 0.77997 0.74426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.48 13.67 21.64 0.30 -53.19 14 2 C -0.01 -0.31 5.50 84.89 0.47 0.15 14 3 Si 1.02 43.43 29.55 68.60 2.03 45.46 14 4 H -0.26 -10.63 7.11 99.48 0.71 -9.93 14 5 H -0.26 -10.04 7.11 99.48 0.71 -9.33 14 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 14 7 C -0.42 -25.85 9.65 67.96 0.66 -25.20 14 8 H 0.09 5.27 6.86 -2.91 -0.02 5.25 14 9 O -0.24 -14.70 9.73 9.31 0.09 -14.61 14 10 C 0.43 22.58 7.63 68.55 0.52 23.11 14 11 O -0.59 -33.25 15.36 19.00 0.29 -32.95 14 12 C -0.19 -7.75 9.45 22.43 0.21 -7.54 14 13 C 0.03 1.09 9.39 22.53 0.21 1.30 14 14 C -0.25 -6.30 6.26 22.85 0.14 -6.16 14 15 C 0.08 1.85 11.39 84.58 0.96 2.82 14 16 N -0.50 -10.81 10.50 -201.48 -2.11 -12.93 14 17 C 0.03 0.51 12.20 130.60 1.59 2.10 14 18 S 0.18 3.70 21.97 -56.49 -1.24 2.46 14 19 H 0.28 15.09 8.31 -92.71 -0.77 14.32 14 20 H 0.14 4.99 7.10 -2.91 -0.02 4.97 14 21 H 0.15 4.71 7.45 -2.91 -0.02 4.69 14 22 H 0.20 3.45 8.06 -2.91 -0.02 3.43 14 23 H 0.24 1.85 8.06 -2.91 -0.02 1.82 14 Total: -1.00 -75.22 239.41 5.36 -69.87 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 1.24 Total: 5.30 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 4.77 Total: -9.41 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: -1.82 Total: -66.11 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: 0.38 Total: -47.56 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.24 Total: 2.46 kcal Total: -75.22 5.36 -69.87 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308186750.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.191 kcal (2) G-P(sol) polarization free energy of solvation -75.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds