Wall clock time and date at job start Mon Mar 30 2020 02:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00202 * 2 1 4 4 H 1.48494 * 109.47139 * 270.00159 * 3 2 1 5 5 H 1.48495 * 109.46833 * 30.00273 * 3 2 1 6 6 H 1.48500 * 109.47019 * 149.99910 * 3 2 1 7 7 C 1.37877 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00311 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47268 * 180.02562 * 9 7 2 11 11 S 1.65600 * 119.99951 * 165.00286 * 10 9 7 12 12 O 1.42100 * 103.00144 * 73.12601 * 11 10 9 13 13 C 1.76199 * 103.00105 * 179.97438 * 11 10 9 14 14 C 1.38238 * 119.99936 * 150.00045 * 13 11 10 15 15 C 1.38235 * 119.99712 * 179.97438 * 14 13 11 16 16 C 1.38234 * 120.00220 * 359.97124 * 15 14 13 17 17 C 1.38233 * 120.00037 * 0.28719 * 16 15 14 18 18 C 1.38233 * 120.00052 * 330.02050 * 13 11 10 19 19 H 0.96995 * 119.99867 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.47232 * 60.00519 * 9 7 2 21 21 H 1.09006 * 109.47536 * 300.00817 * 9 7 2 22 22 H 0.96998 * 119.99905 * 345.00114 * 10 9 7 23 23 H 1.08005 * 120.00068 * 359.97438 * 14 13 11 24 24 H 1.07999 * 119.99770 * 179.97438 * 15 14 13 25 25 H 1.08002 * 119.99744 * 180.02562 * 16 15 14 26 26 H 1.07998 * 120.00395 * 179.72811 * 17 16 15 27 27 H 1.07999 * 119.99956 * 0.02562 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 16 1.6881 -5.1422 0.3706 12 8 0.9544 -5.5219 -0.7856 13 6 3.1611 -6.0998 0.2365 14 6 3.3259 -7.2276 1.0188 15 6 4.4813 -7.9791 0.9132 16 6 5.4716 -7.6032 0.0250 17 6 5.3091 -6.4724 -0.7533 18 6 4.1521 -5.7230 -0.6505 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5568 -0.8903 21 1 0.6245 -2.5571 0.8896 22 1 3.1349 -3.4540 -0.2179 23 1 2.5520 -7.5215 1.7124 24 1 4.6103 -8.8599 1.5247 25 1 6.3741 -8.1906 -0.0577 26 1 6.0847 -6.1763 -1.4441 27 1 4.0236 -4.8415 -1.2611 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385435474.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:03 Heat of formation + Delta-G solvation = -15.272027 kcal Electronic energy + Delta-G solvation = -12694.167805 eV Core-core repulsion = 10350.334514 eV Total energy + Delta-G solvation = -2343.833291 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.83621 -34.92345 -34.18973 -31.95210 -30.94077 -30.83174 -26.45634 -22.98445 -22.59297 -21.85591 -17.87639 -17.75356 -16.26738 -15.43773 -15.16854 -14.72526 -14.61721 -13.91035 -13.48519 -13.14088 -12.99516 -12.62440 -12.00530 -11.82553 -11.52555 -11.12648 -11.00076 -10.85784 -10.35224 -9.79577 -9.31993 -9.02301 -8.90211 -8.72930 -8.28019 -7.30557 -6.10460 -4.14521 1.16366 1.42414 2.59273 3.28006 3.33598 3.35512 3.40909 3.74730 4.39416 4.83129 4.91093 4.97059 5.04966 5.25642 5.41160 5.55481 5.85918 6.01766 6.34939 6.37731 6.46202 6.76779 6.99970 7.47444 7.57632 7.90330 8.09694 8.41176 8.93338 9.50411 10.99820 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.044090 B = 0.006489 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.908614 B = 4313.948260 C = 4749.413284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.265 3.735 10 N -1.021 6.021 11 S 1.558 4.442 12 O -0.912 6.912 13 C -0.469 4.469 14 C -0.051 4.051 15 C -0.138 4.138 16 C -0.100 4.100 17 C -0.135 4.135 18 C -0.061 4.061 19 H 0.264 0.736 20 H 0.010 0.990 21 H 0.022 0.978 22 H 0.384 0.616 23 H 0.131 0.869 24 H 0.124 0.876 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.303 -12.688 5.718 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.729 3.271 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.079 0.921 9 C 0.141 3.859 10 N -0.777 5.777 11 S 1.658 4.342 12 O -0.896 6.896 13 C -0.562 4.562 14 C -0.071 4.071 15 C -0.157 4.157 16 C -0.118 4.118 17 C -0.154 4.154 18 C -0.081 4.081 19 H 0.074 0.926 20 H 0.027 0.973 21 H 0.040 0.960 22 H 0.213 0.787 23 H 0.148 0.852 24 H 0.142 0.858 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.984 -12.879 5.899 15.794 hybrid contribution 2.008 1.027 -2.155 3.120 sum 8.992 -11.852 3.744 15.341 Atomic orbital electron populations 1.69950 1.06039 1.27121 1.49972 1.24983 0.94934 0.99349 0.95055 0.86452 0.79689 0.82861 0.78117 1.20693 1.21055 1.19786 1.21281 0.93287 0.90315 1.51624 0.92054 1.18740 0.87916 0.83272 0.95988 1.52961 1.16625 1.19576 1.88490 1.68970 0.78151 0.76575 1.10551 1.92964 1.63891 1.79206 1.53511 1.28820 1.16925 1.08320 1.02126 1.20749 0.96941 0.92887 0.96517 1.21220 0.94614 1.00240 0.99581 1.21229 0.98667 0.96328 0.95581 1.21251 0.98014 0.96017 1.00092 1.21105 0.92967 0.98551 0.95438 0.92606 0.97255 0.96006 0.78705 0.85160 0.85843 0.86197 0.86126 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 15 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 15 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 7 C -0.53 -14.50 9.27 -34.44 -0.32 -14.82 15 8 H 0.06 1.63 7.65 -52.49 -0.40 1.23 15 9 C 0.27 6.91 6.06 -5.20 -0.03 6.88 15 10 N -1.02 -21.56 5.69 -11.66 -0.07 -21.62 15 11 S 1.56 26.94 14.29 -107.50 -1.54 25.40 15 12 O -0.91 -21.83 17.77 -35.23 -0.63 -22.46 15 13 C -0.47 -7.31 5.75 -39.58 -0.23 -7.54 15 14 C -0.05 -0.64 9.75 -39.58 -0.39 -1.03 15 15 C -0.14 -1.55 10.05 -39.58 -0.40 -1.95 15 16 C -0.10 -1.16 10.05 -39.58 -0.40 -1.56 15 17 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 15 18 C -0.06 -0.98 9.09 -39.58 -0.36 -1.34 15 19 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 20 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 15 21 H 0.02 0.57 8.14 -51.93 -0.42 0.14 15 22 H 0.38 7.69 6.60 -34.47 -0.23 7.46 15 23 H 0.13 1.15 8.06 -52.48 -0.42 0.73 15 24 H 0.12 1.01 8.06 -52.49 -0.42 0.59 15 25 H 0.12 1.05 8.06 -52.49 -0.42 0.63 15 26 H 0.12 1.36 8.06 -52.49 -0.42 0.94 15 27 H 0.12 2.06 6.77 -52.49 -0.36 1.71 15 LS Contribution 255.27 15.07 3.85 3.85 Total: -1.00 -36.18 255.27 -7.94 -44.12 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -2.66 Total: 1.99 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -2.61 Total: -22.00 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.67 Total: -47.06 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.63 Total: -22.46 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 26.94 SS G_CDS: -1.54 Total: 25.40 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -36.18 -7.94 -44.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385435474.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.850 kcal (2) G-P(sol) polarization free energy of solvation -36.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds