Wall clock time and date at job start Mon Mar 30 2020 02:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00202 * 2 1 4 4 H 1.48494 * 109.47139 * 270.00159 * 3 2 1 5 5 H 1.48495 * 109.46833 * 30.00273 * 3 2 1 6 6 H 1.48500 * 109.47019 * 149.99910 * 3 2 1 7 7 C 1.37877 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00311 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47268 * 180.02562 * 9 7 2 11 11 S 1.65600 * 119.99951 * 165.00286 * 10 9 7 12 12 O 1.42100 * 103.00144 * 73.12601 * 11 10 9 13 13 C 1.76199 * 103.00105 * 179.97438 * 11 10 9 14 14 C 1.38238 * 119.99936 * 150.00045 * 13 11 10 15 15 C 1.38235 * 119.99712 * 179.97438 * 14 13 11 16 16 C 1.38234 * 120.00220 * 359.97124 * 15 14 13 17 17 C 1.38233 * 120.00037 * 0.28719 * 16 15 14 18 18 C 1.38233 * 120.00052 * 330.02050 * 13 11 10 19 19 H 0.96995 * 119.99867 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.47232 * 60.00519 * 9 7 2 21 21 H 1.09006 * 109.47536 * 300.00817 * 9 7 2 22 22 H 0.96998 * 119.99905 * 345.00114 * 10 9 7 23 23 H 1.08005 * 120.00068 * 359.97438 * 14 13 11 24 24 H 1.07999 * 119.99770 * 179.97438 * 15 14 13 25 25 H 1.08002 * 119.99744 * 180.02562 * 16 15 14 26 26 H 1.07998 * 120.00395 * 179.72811 * 17 16 15 27 27 H 1.07999 * 119.99956 * 0.02562 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 16 1.6881 -5.1422 0.3706 12 8 0.9544 -5.5219 -0.7856 13 6 3.1611 -6.0998 0.2365 14 6 3.3259 -7.2276 1.0188 15 6 4.4813 -7.9791 0.9132 16 6 5.4716 -7.6032 0.0250 17 6 5.3091 -6.4724 -0.7533 18 6 4.1521 -5.7230 -0.6505 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5568 -0.8903 21 1 0.6245 -2.5571 0.8896 22 1 3.1349 -3.4540 -0.2179 23 1 2.5520 -7.5215 1.7124 24 1 4.6103 -8.8599 1.5247 25 1 6.3741 -8.1906 -0.0577 26 1 6.0847 -6.1763 -1.4441 27 1 4.0236 -4.8415 -1.2611 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385435474.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:03 Heat of formation + Delta-G solvation = -42.154056 kcal Electronic energy + Delta-G solvation = -12695.333498 eV Core-core repulsion = 10350.334514 eV Total energy + Delta-G solvation = -2344.998983 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.84949 -36.65220 -36.16554 -33.94975 -32.00621 -31.87547 -28.51373 -24.61948 -23.66882 -23.30670 -19.59680 -19.07271 -17.92978 -16.83742 -16.76278 -16.26979 -15.97292 -15.34320 -14.90438 -14.64731 -14.32502 -14.10303 -13.87900 -13.43558 -12.98808 -12.81662 -12.66596 -12.19513 -12.10062 -11.67967 -11.18514 -10.78743 -10.23793 -9.96646 -9.91198 -9.01093 -8.24626 -6.37837 0.08522 0.41560 1.16647 1.42909 1.44033 1.55820 1.91637 2.40916 2.69348 3.08797 3.39842 3.87844 4.06194 4.17766 4.49684 4.56612 4.75421 4.86456 5.05647 5.30384 5.33488 5.37782 5.41565 5.48814 5.77561 6.02710 6.05433 6.48472 6.83776 7.32820 8.86729 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.044090 B = 0.006489 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.908614 B = 4313.948260 C = 4749.413284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.977 3.023 4 H -0.279 1.279 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.546 4.546 8 H 0.069 0.931 9 C 0.276 3.724 10 N -1.023 6.023 11 S 1.611 4.389 12 O -0.981 6.981 13 C -0.491 4.491 14 C -0.053 4.053 15 C -0.133 4.133 16 C -0.093 4.093 17 C -0.145 4.145 18 C -0.094 4.094 19 H 0.268 0.732 20 H -0.038 1.038 21 H 0.022 0.978 22 H 0.388 0.612 23 H 0.167 0.833 24 H 0.166 0.834 25 H 0.157 0.843 26 H 0.137 0.863 27 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.606 -13.896 7.094 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.801 3.199 4 H -0.205 1.205 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.585 4.585 8 H 0.087 0.913 9 C 0.150 3.850 10 N -0.776 5.776 11 S 1.715 4.285 12 O -0.965 6.965 13 C -0.588 4.588 14 C -0.072 4.072 15 C -0.151 4.151 16 C -0.110 4.110 17 C -0.164 4.164 18 C -0.114 4.114 19 H 0.077 0.923 20 H -0.021 1.021 21 H 0.040 0.960 22 H 0.218 0.782 23 H 0.185 0.815 24 H 0.183 0.817 25 H 0.174 0.826 26 H 0.155 0.845 27 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.276 -14.073 7.281 18.360 hybrid contribution 1.420 1.216 -2.558 3.169 sum 10.696 -12.857 4.723 17.378 Atomic orbital electron populations 1.70081 1.07815 1.28370 1.50637 1.25969 0.95840 1.03398 0.94269 0.85277 0.78701 0.77772 0.78180 1.20500 1.20276 1.18305 1.21641 0.93825 0.91204 1.51828 0.91308 1.18342 0.88165 0.84839 0.93670 1.52858 1.16186 1.20118 1.88421 1.68088 0.77976 0.74371 1.08098 1.92844 1.67326 1.80219 1.56146 1.28322 1.15678 1.10101 1.04661 1.21270 0.98620 0.91366 0.95954 1.21751 0.93365 1.00830 0.99167 1.21740 0.99963 0.95281 0.94063 1.21505 0.97405 0.96547 1.00971 1.21123 0.94851 0.99035 0.96365 0.92279 1.02058 0.96040 0.78248 0.81542 0.81675 0.82562 0.84502 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 13.29 21.45 0.28 -55.44 15 2 C 0.00 0.26 5.46 84.65 0.46 0.73 15 3 Si 0.98 43.49 29.54 68.60 2.03 45.52 15 4 H -0.28 -12.29 7.11 99.48 0.71 -11.59 15 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 15 7 C -0.55 -30.76 9.27 25.60 0.24 -30.53 15 8 H 0.07 3.68 7.65 -2.91 -0.02 3.66 15 9 C 0.28 15.05 6.06 85.63 0.52 15.57 15 10 N -1.02 -45.04 5.69 -190.79 -1.09 -46.13 15 11 S 1.61 57.42 14.29 -56.49 -0.81 56.62 15 12 O -0.98 -49.05 17.77 -148.98 -2.65 -51.70 15 13 C -0.49 -15.02 5.75 22.27 0.13 -14.89 15 14 C -0.05 -1.16 9.75 22.27 0.22 -0.94 15 15 C -0.13 -2.38 10.05 22.27 0.22 -2.16 15 16 C -0.09 -1.78 10.05 22.27 0.22 -1.56 15 17 C -0.15 -3.65 10.05 22.27 0.22 -3.42 15 18 C -0.09 -3.02 9.09 22.27 0.20 -2.82 15 19 H 0.27 15.00 8.31 -92.71 -0.77 14.23 15 20 H -0.04 -2.43 8.14 -2.39 -0.02 -2.45 15 21 H 0.02 1.17 8.14 -2.38 -0.02 1.15 15 22 H 0.39 16.20 6.60 -96.75 -0.64 15.56 15 23 H 0.17 2.31 8.06 -2.91 -0.02 2.29 15 24 H 0.17 1.64 8.06 -2.91 -0.02 1.62 15 25 H 0.16 1.88 8.06 -2.91 -0.02 1.86 15 26 H 0.14 2.85 8.06 -2.91 -0.02 2.82 15 27 H 0.10 3.53 6.77 -2.91 -0.02 3.51 15 Total: -1.00 -80.64 255.27 0.75 -79.90 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.54 Total: 11.25 kcal Atomic # 6 Polarization: -42.45 SS G_CDS: 2.44 Total: -40.02 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -0.80 Total: -101.57 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -2.65 Total: -51.70 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 57.42 SS G_CDS: -0.81 Total: 56.62 kcal Total: -80.64 0.75 -79.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385435474.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.744 kcal (2) G-P(sol) polarization free energy of solvation -80.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds