Wall clock time and date at job start Mon Mar 30 2020 02:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31381 * 1 3 3 Si 1.86798 * 120.00343 * 2 1 4 4 H 1.48496 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47232 * 299.99774 * 3 2 1 6 6 H 1.48502 * 109.47300 * 59.99884 * 3 2 1 7 7 C 1.38877 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00248 * 180.02562 * 7 2 1 9 9 O 1.34782 * 119.99763 * 0.02562 * 7 2 1 10 10 C 1.34915 * 117.00090 * 180.02562 * 9 7 2 11 11 O 1.21701 * 119.99649 * 359.97438 * 10 9 7 12 12 C 1.41633 * 120.00041 * 179.97438 * 10 9 7 13 13 C 1.35458 * 120.00037 * 179.97438 * 12 10 9 14 14 C 1.46290 * 120.00107 * 180.02562 * 13 12 10 15 15 N 1.30884 * 125.54998 * 179.97438 * 14 13 12 16 16 C 1.30786 * 115.80819 * 180.02562 * 15 14 13 17 17 C 1.34209 * 115.80730 * 0.02562 * 16 15 14 18 18 S 1.71064 * 109.15355 * 359.97438 * 17 16 15 19 19 H 0.97005 * 119.99542 * 0.02562 * 1 2 3 20 20 H 1.08003 * 119.99807 * 359.97438 * 12 10 9 21 21 H 1.08002 * 120.00155 * 359.97438 * 13 12 10 22 22 H 1.08000 * 122.09786 * 179.97438 * 16 15 14 23 23 H 1.07999 * 125.42299 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.7079 1.3463 0.0006 5 1 1.8893 2.3963 -1.2124 6 1 1.8892 2.3964 1.2125 7 6 2.0082 -1.2027 0.0005 8 1 3.0881 -1.2028 0.0010 9 8 1.3342 -2.3699 0.0005 10 6 2.0689 -3.5015 0.0016 11 8 3.2843 -3.4378 0.0021 12 6 1.4259 -4.7634 0.0022 13 6 2.1635 -5.8995 0.0028 14 6 1.4993 -7.2029 0.0029 15 7 2.1026 -8.3644 0.0029 16 6 1.3202 -9.4124 0.0024 17 6 0.0025 -9.1578 0.0014 18 16 -0.2420 -7.4647 0.0018 19 1 -0.4850 0.8401 -0.0004 20 1 0.3473 -4.8198 0.0023 21 1 3.2421 -5.8431 0.0023 22 1 1.7100 -10.4196 0.0020 23 1 -0.7791 -9.9031 0.0005 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393535753.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:48 Heat of formation + Delta-G solvation = -37.861864 kcal Electronic energy + Delta-G solvation = -12167.222767 eV Core-core repulsion = 9686.576813 eV Total energy + Delta-G solvation = -2480.645954 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.025 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.16761 -40.55831 -37.58743 -35.04151 -34.34945 -30.99805 -28.26875 -26.75944 -24.30009 -21.24300 -21.04646 -19.94203 -18.75789 -18.65069 -16.97011 -16.62296 -16.48043 -16.21078 -15.54690 -14.95683 -14.74209 -14.24306 -13.63895 -13.28437 -13.27049 -12.45815 -12.42127 -12.16514 -12.01136 -11.60259 -11.23415 -10.89301 -10.72939 -10.55400 -9.44036 -8.59227 -6.33335 -1.08073 0.22435 0.43695 0.75012 1.36450 1.40755 1.55284 1.81958 2.11442 2.26123 2.62590 2.99199 3.42664 3.96433 4.04754 4.33446 4.43814 4.51137 4.83877 5.08192 5.18268 5.26573 5.78530 6.59685 6.61325 6.85398 7.68439 8.61467 Molecular weight = 225.02amu Principal moments of inertia in cm(-1) A = 0.074137 B = 0.005272 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.589239 B = 5309.896402 C = 5677.644672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C -0.003 4.003 3 Si 1.021 2.979 4 H -0.264 1.264 5 H -0.258 1.258 6 H -0.258 1.258 7 C -0.416 4.416 8 H 0.086 0.914 9 O -0.233 6.233 10 C 0.424 3.576 11 O -0.585 6.585 12 C -0.150 4.150 13 C 0.016 3.984 14 C 0.024 3.976 15 N -0.466 5.466 16 C 0.014 3.986 17 C -0.262 4.262 18 S 0.207 5.793 19 H 0.282 0.718 20 H 0.149 0.851 21 H 0.144 0.856 22 H 0.203 0.797 23 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.771 -14.942 -0.001 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.204 4.204 3 Si 0.839 3.161 4 H -0.188 1.188 5 H -0.182 1.182 6 H -0.183 1.183 7 C -0.492 4.492 8 H 0.103 0.897 9 O -0.141 6.141 10 C 0.276 3.724 11 O -0.487 6.487 12 C -0.174 4.174 13 C -0.006 4.006 14 C -0.245 4.245 15 N -0.182 5.182 16 C -0.141 4.141 17 C -0.402 4.402 18 S 0.462 5.538 19 H 0.092 0.908 20 H 0.167 0.833 21 H 0.162 0.838 22 H 0.220 0.780 23 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -3.993 -14.189 0.000 14.740 hybrid contribution 0.766 -0.256 0.000 0.808 sum -3.227 -14.445 0.000 14.801 Atomic orbital electron populations 1.70046 1.07776 1.29725 1.45549 1.26635 0.96908 1.02432 0.94448 0.84523 0.77812 0.74364 0.79376 1.18787 1.18244 1.18255 1.21595 0.92472 0.81046 1.54059 0.89669 1.83973 1.40052 1.14302 1.75768 1.20217 0.86156 0.86919 0.79073 1.90665 1.16466 1.88760 1.52767 1.21176 1.01335 0.88942 1.05986 1.21286 1.00225 0.86843 0.92221 1.25871 0.94362 0.95094 1.09162 1.67020 1.38893 0.98036 1.14238 1.22208 0.89228 0.99393 1.03294 1.27171 1.02403 1.01261 1.09373 1.84049 1.06111 1.00573 1.63022 0.90832 0.83295 0.83840 0.77991 0.76428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.22 13.67 21.65 0.30 -51.93 14 2 C 0.00 -0.16 5.50 84.91 0.47 0.30 14 3 Si 1.02 42.90 29.55 68.60 2.03 44.93 14 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 14 5 H -0.26 -10.08 7.11 99.48 0.71 -9.37 14 6 H -0.26 -10.09 7.11 99.48 0.71 -9.38 14 7 C -0.42 -25.40 9.65 67.97 0.66 -24.74 14 8 H 0.09 5.28 6.86 -2.91 -0.02 5.26 14 9 O -0.23 -13.95 9.73 10.19 0.10 -13.85 14 10 C 0.42 22.15 7.64 68.66 0.52 22.67 14 11 O -0.59 -33.13 15.36 19.18 0.29 -32.83 14 12 C -0.15 -5.91 9.50 22.47 0.21 -5.69 14 13 C 0.02 0.57 9.70 23.72 0.23 0.80 14 14 C 0.02 0.70 7.40 86.93 0.64 1.34 14 15 N -0.47 -13.10 10.67 -190.97 -2.04 -15.14 14 16 C 0.01 0.29 11.24 83.93 0.94 1.23 14 17 C -0.26 -4.19 11.08 66.90 0.74 -3.45 14 18 S 0.21 4.43 22.05 -56.49 -1.25 3.18 14 19 H 0.28 14.77 8.31 -92.70 -0.77 14.00 14 20 H 0.15 5.12 7.16 -2.91 -0.02 5.10 14 21 H 0.14 5.29 7.46 -2.91 -0.02 5.27 14 22 H 0.20 2.62 8.06 -2.91 -0.02 2.59 14 23 H 0.22 1.68 8.06 -2.91 -0.02 1.66 14 Total: -1.00 -73.42 239.96 5.09 -68.32 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 1.24 Total: 4.86 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 4.42 Total: -7.54 kcal Atomic # 7 Polarization: -65.33 SS G_CDS: -1.74 Total: -67.07 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: 0.39 Total: -46.69 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -1.25 Total: 3.18 kcal Total: -73.42 5.09 -68.32 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393535753.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.459 kcal (2) G-P(sol) polarization free energy of solvation -73.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds