Wall clock time and date at job start Mon Mar 30 2020 02:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31385 * 1 3 3 Si 1.86795 * 119.99883 * 2 1 4 4 H 1.48504 * 109.47214 * 270.00175 * 3 2 1 5 5 H 1.48497 * 109.47161 * 30.00106 * 3 2 1 6 6 H 1.48504 * 109.47241 * 150.00166 * 3 2 1 7 7 C 1.38874 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99788 * 0.02562 * 7 2 1 9 9 O 1.34783 * 119.99857 * 179.97438 * 7 2 1 10 10 C 1.34909 * 117.00010 * 180.02562 * 9 7 2 11 11 O 1.21712 * 120.00096 * 0.02562 * 10 9 7 12 12 C 1.41635 * 120.00077 * 179.97438 * 10 9 7 13 13 C 1.35460 * 119.99813 * 186.60972 * 12 10 9 14 14 C 1.46300 * 120.00375 * 8.55343 * 13 12 10 15 15 N 1.30873 * 125.54904 * 44.29937 * 14 13 12 16 16 C 1.30787 * 115.81071 * 179.97438 * 15 14 13 17 17 C 1.34207 * 115.80431 * 0.02562 * 16 15 14 18 18 S 1.71066 * 109.15633 * 359.76632 * 17 16 15 19 19 H 0.96999 * 120.00048 * 0.02562 * 1 2 3 20 20 H 1.07992 * 120.00040 * 6.61819 * 12 10 9 21 21 H 1.08006 * 119.99952 * 188.55246 * 13 12 10 22 22 H 1.08001 * 122.09964 * 180.02562 * 16 15 14 23 23 H 1.07989 * 125.42535 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.4953 2.0465 -1.4001 5 1 1.4453 2.6526 0.7000 6 1 3.5454 1.4402 0.7000 7 6 2.0082 -1.2027 -0.0005 8 1 1.4682 -2.1379 -0.0014 9 8 3.3560 -1.2027 -0.0011 10 6 3.9685 -2.4047 -0.0021 11 8 3.3057 -3.4255 -0.0030 12 6 5.3829 -2.4788 -0.0032 13 6 5.9982 -3.6779 -0.1393 14 6 5.2153 -4.8684 -0.4715 15 7 4.2753 -4.9318 -1.3799 16 6 3.6966 -6.0963 -1.5201 17 6 4.1431 -7.0715 -0.7133 18 16 5.3885 -6.4507 0.2816 19 1 -0.4850 0.8400 -0.0004 20 1 5.9709 -1.5794 0.1045 21 1 7.0668 -3.7552 -0.0026 22 1 2.9088 -6.2627 -2.2399 23 1 3.7775 -8.0875 -0.6979 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393535755.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:51 Heat of formation + Delta-G solvation = 8.824024 kcal Electronic energy + Delta-G solvation = -12797.860739 eV Core-core repulsion = 10319.239237 eV Total energy + Delta-G solvation = -2478.621502 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.025 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.57711 -38.69170 -35.63080 -33.12709 -32.34486 -29.36199 -26.49817 -24.90999 -22.68655 -20.20009 -18.43573 -18.04234 -17.84957 -16.52004 -15.34186 -14.76792 -14.58641 -14.16263 -13.90775 -13.48695 -12.94405 -12.47468 -12.35868 -11.78161 -11.32217 -11.20132 -10.51336 -10.38123 -9.91944 -9.71721 -9.36293 -9.04365 -8.80064 -8.65851 -7.98427 -6.41669 -4.06631 0.61847 1.43977 2.00018 2.15145 3.20952 3.24469 3.36934 3.49151 4.05781 4.22360 4.42319 4.60041 5.13908 5.35257 5.39855 5.65531 5.82456 6.02043 6.23823 6.58362 6.79324 7.77185 8.01683 8.22335 8.71267 8.98595 9.72575 10.66212 Molecular weight = 225.02amu Principal moments of inertia in cm(-1) A = 0.053620 B = 0.007386 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.072169 B = 3789.848193 C = 4146.397971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.060 3.940 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.359 4.359 8 H 0.110 0.890 9 O -0.247 6.247 10 C 0.419 3.581 11 O -0.518 6.518 12 C -0.101 4.101 13 C -0.055 4.055 14 C 0.101 3.899 15 N -0.406 5.406 16 C 0.049 3.951 17 C -0.296 4.296 18 S 0.104 5.896 19 H 0.281 0.719 20 H 0.142 0.858 21 H 0.151 0.849 22 H 0.166 0.834 23 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.580 -8.307 0.024 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.435 4.435 8 H 0.127 0.873 9 O -0.156 6.156 10 C 0.268 3.732 11 O -0.414 6.414 12 C -0.126 4.126 13 C -0.078 4.078 14 C -0.172 4.172 15 N -0.119 5.119 16 C -0.107 4.107 17 C -0.436 4.436 18 S 0.362 5.638 19 H 0.091 0.909 20 H 0.160 0.840 21 H 0.168 0.832 22 H 0.183 0.817 23 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 12.686 -8.464 0.491 15.258 hybrid contribution -0.781 0.520 -0.593 1.110 sum 11.905 -7.944 -0.102 14.312 Atomic orbital electron populations 1.69587 1.05882 1.28622 1.46465 1.24642 0.95069 0.98914 0.95776 0.86160 0.80294 0.81177 0.79007 1.19770 1.20739 1.18286 1.20733 0.76597 0.96895 1.49281 0.87264 1.83601 1.23768 1.31873 1.76313 1.19406 0.89228 0.82836 0.81712 1.90791 1.66948 1.35061 1.48558 1.21686 0.93353 0.98004 0.99537 1.21335 0.97975 0.88659 0.99838 1.25870 0.97882 0.96036 0.97423 1.67044 1.04367 1.22402 1.18084 1.21667 1.01367 0.86884 1.00800 1.26254 1.06596 1.05891 1.04824 1.83456 1.33703 1.07340 1.39339 0.90895 0.84038 0.83191 0.81733 0.81272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.79 13.95 55.49 0.77 -25.01 14 2 C 0.06 1.74 5.50 -17.51 -0.10 1.65 14 3 Si 0.91 21.50 28.62 -169.99 -4.86 16.64 14 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 14 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 14 6 H -0.26 -5.97 7.11 56.52 0.40 -5.57 14 7 C -0.36 -10.85 10.11 30.97 0.31 -10.54 14 8 H 0.11 3.66 7.09 -52.49 -0.37 3.28 14 9 O -0.25 -6.67 8.56 -21.92 -0.19 -6.86 14 10 C 0.42 10.22 7.46 32.03 0.24 10.46 14 11 O -0.52 -13.97 11.77 -19.43 -0.23 -14.20 14 12 C -0.10 -1.78 10.00 -39.28 -0.39 -2.17 14 13 C -0.06 -0.84 10.23 -37.33 -0.38 -1.22 14 14 C 0.10 1.79 5.69 -14.72 -0.08 1.71 14 15 N -0.41 -8.29 8.02 -11.71 -0.09 -8.38 14 16 C 0.05 0.86 11.24 -19.42 -0.22 0.64 14 17 C -0.30 -4.33 11.08 29.31 0.32 -4.00 14 18 S 0.10 1.48 23.20 -107.50 -2.49 -1.01 14 19 H 0.28 7.59 8.31 -40.82 -0.34 7.26 14 20 H 0.14 1.97 8.06 -52.49 -0.42 1.54 14 21 H 0.15 1.49 8.06 -52.48 -0.42 1.07 14 22 H 0.17 2.54 8.06 -52.49 -0.42 2.12 14 23 H 0.17 1.92 8.06 -52.49 -0.42 1.49 14 LS Contribution 234.38 15.07 3.53 3.53 Total: -1.00 -34.42 234.38 -5.06 -39.48 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -1.20 Total: -0.70 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -0.30 Total: -3.48 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.68 Total: -33.39 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.42 Total: -21.06 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.86 Total: 16.64 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.49 Total: -1.01 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -34.42 -5.06 -39.48 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393535755.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.300 kcal (2) G-P(sol) polarization free energy of solvation -34.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds