Wall clock time and date at job start Mon Mar 30 2020 02:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31385 * 1 3 3 Si 1.86795 * 119.99883 * 2 1 4 4 H 1.48504 * 109.47214 * 270.00175 * 3 2 1 5 5 H 1.48497 * 109.47161 * 30.00106 * 3 2 1 6 6 H 1.48504 * 109.47241 * 150.00166 * 3 2 1 7 7 C 1.38874 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99788 * 0.02562 * 7 2 1 9 9 O 1.34783 * 119.99857 * 179.97438 * 7 2 1 10 10 C 1.34909 * 117.00010 * 180.02562 * 9 7 2 11 11 O 1.21712 * 120.00096 * 0.02562 * 10 9 7 12 12 C 1.41635 * 120.00077 * 179.97438 * 10 9 7 13 13 C 1.35460 * 119.99813 * 186.60972 * 12 10 9 14 14 C 1.46300 * 120.00375 * 8.55343 * 13 12 10 15 15 N 1.30873 * 125.54904 * 44.29937 * 14 13 12 16 16 C 1.30787 * 115.81071 * 179.97438 * 15 14 13 17 17 C 1.34207 * 115.80431 * 0.02562 * 16 15 14 18 18 S 1.71066 * 109.15633 * 359.76632 * 17 16 15 19 19 H 0.96999 * 120.00048 * 0.02562 * 1 2 3 20 20 H 1.07992 * 120.00040 * 6.61819 * 12 10 9 21 21 H 1.08006 * 119.99952 * 188.55246 * 13 12 10 22 22 H 1.08001 * 122.09964 * 180.02562 * 16 15 14 23 23 H 1.07989 * 125.42535 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.4953 2.0465 -1.4001 5 1 1.4453 2.6526 0.7000 6 1 3.5454 1.4402 0.7000 7 6 2.0082 -1.2027 -0.0005 8 1 1.4682 -2.1379 -0.0014 9 8 3.3560 -1.2027 -0.0011 10 6 3.9685 -2.4047 -0.0021 11 8 3.3057 -3.4255 -0.0030 12 6 5.3829 -2.4788 -0.0032 13 6 5.9982 -3.6779 -0.1393 14 6 5.2153 -4.8684 -0.4715 15 7 4.2753 -4.9318 -1.3799 16 6 3.6966 -6.0963 -1.5201 17 6 4.1431 -7.0715 -0.7133 18 16 5.3885 -6.4507 0.2816 19 1 -0.4850 0.8400 -0.0004 20 1 5.9709 -1.5794 0.1045 21 1 7.0668 -3.7552 -0.0026 22 1 2.9088 -6.2627 -2.2399 23 1 3.7775 -8.0875 -0.6979 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393535755.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:50 Heat of formation + Delta-G solvation = -16.002565 kcal Electronic energy + Delta-G solvation = -12798.937301 eV Core-core repulsion = 10319.239237 eV Total energy + Delta-G solvation = -2479.698064 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.025 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.30804 -40.24018 -37.52620 -34.65656 -34.47791 -30.71523 -28.27448 -26.56845 -24.23227 -21.77912 -20.15413 -19.73516 -19.52478 -18.13524 -16.99107 -16.54975 -16.30179 -15.67765 -15.59222 -14.80443 -14.52040 -14.28065 -13.93411 -13.40996 -13.21428 -12.45805 -12.35191 -12.24919 -11.84674 -11.33150 -10.98303 -10.81362 -10.52540 -10.10442 -9.32156 -8.54651 -6.36038 -0.68486 0.15788 0.74155 0.85321 1.34118 1.40238 1.56455 2.09774 2.28775 2.32715 2.72127 2.98705 3.40924 4.11887 4.31355 4.39924 4.56149 4.60055 4.89396 5.26586 5.28609 5.55303 5.93001 6.62161 6.85413 6.94787 7.66541 8.58805 Molecular weight = 225.02amu Principal moments of inertia in cm(-1) A = 0.053620 B = 0.007386 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.072169 B = 3789.848193 C = 4146.397971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.009 3.991 3 Si 0.989 3.011 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.246 1.246 7 C -0.396 4.396 8 H 0.050 0.950 9 O -0.260 6.260 10 C 0.425 3.575 11 O -0.549 6.549 12 C -0.144 4.144 13 C 0.001 3.999 14 C 0.042 3.958 15 N -0.456 5.456 16 C 0.008 3.992 17 C -0.283 4.283 18 S 0.194 5.806 19 H 0.289 0.711 20 H 0.185 0.815 21 H 0.217 0.783 22 H 0.167 0.833 23 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.181 -8.775 0.735 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.190 4.190 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.170 1.170 7 C -0.472 4.472 8 H 0.068 0.932 9 O -0.171 6.171 10 C 0.275 3.725 11 O -0.445 6.445 12 C -0.168 4.168 13 C -0.021 4.021 14 C -0.230 4.230 15 N -0.170 5.170 16 C -0.148 4.148 17 C -0.423 4.423 18 S 0.452 5.548 19 H 0.099 0.901 20 H 0.203 0.797 21 H 0.233 0.767 22 H 0.185 0.815 23 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 16.298 -8.965 1.208 18.640 hybrid contribution -1.729 0.128 -0.810 1.914 sum 14.569 -8.837 0.397 17.044 Atomic orbital electron populations 1.69693 1.07762 1.30201 1.48371 1.25677 0.96039 1.02939 0.94371 0.85000 0.79100 0.75371 0.79721 1.18651 1.18972 1.16963 1.20258 0.78149 0.95421 1.53388 0.93191 1.83611 1.21710 1.33061 1.78670 1.20866 0.91849 0.81647 0.78159 1.90774 1.68622 1.36077 1.49043 1.21844 0.89463 1.01085 1.04436 1.22295 1.00513 0.86491 0.92763 1.26490 0.98715 0.99024 0.98769 1.66983 1.05529 1.24289 1.20160 1.21867 1.02761 0.87342 1.02785 1.26807 1.05714 1.06911 1.02911 1.83072 1.31564 1.03411 1.36785 0.90144 0.79746 0.76661 0.81542 0.77801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.55 13.95 21.65 0.30 -57.25 14 2 C 0.01 0.54 5.50 84.91 0.47 1.00 14 3 Si 0.99 44.91 28.62 68.60 1.96 46.87 14 4 H -0.26 -11.33 7.11 99.48 0.71 -10.63 14 5 H -0.27 -11.16 7.11 99.48 0.71 -10.46 14 6 H -0.25 -10.56 7.11 99.48 0.71 -9.86 14 7 C -0.40 -25.46 10.11 67.97 0.69 -24.77 14 8 H 0.05 3.68 7.09 -2.91 -0.02 3.66 14 9 O -0.26 -14.52 8.56 10.25 0.09 -14.43 14 10 C 0.43 21.09 7.46 68.66 0.51 21.60 14 11 O -0.55 -30.85 11.77 19.15 0.23 -30.62 14 12 C -0.14 -4.75 10.00 22.47 0.22 -4.52 14 13 C 0.00 0.02 10.23 23.73 0.24 0.26 14 14 C 0.04 1.40 5.69 86.93 0.49 1.90 14 15 N -0.46 -18.60 8.02 -190.96 -1.53 -20.13 14 16 C 0.01 0.29 11.24 83.93 0.94 1.23 14 17 C -0.28 -7.59 11.08 66.90 0.74 -6.85 14 18 S 0.19 4.76 23.20 -56.49 -1.31 3.45 14 19 H 0.29 16.23 8.31 -92.71 -0.77 15.46 14 20 H 0.19 4.40 8.06 -2.91 -0.02 4.38 14 21 H 0.22 2.73 8.06 -2.91 -0.02 2.71 14 22 H 0.17 5.37 8.06 -2.91 -0.02 5.35 14 23 H 0.21 3.86 8.06 -2.92 -0.02 3.83 14 Total: -1.00 -83.09 234.38 5.28 -77.80 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: 1.24 Total: 4.46 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 4.31 Total: -10.14 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -1.23 Total: -77.38 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: 0.31 Total: -45.05 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.96 Total: 46.87 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -1.31 Total: 3.45 kcal Total: -83.09 5.28 -77.80 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393535755.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.802 kcal (2) G-P(sol) polarization free energy of solvation -83.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds