Wall clock time and date at job start Mon Mar 30 2020 02:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99800 * 2 1 4 4 H 1.48497 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46925 * 299.99920 * 3 2 1 6 6 H 1.48501 * 109.47045 * 59.99580 * 3 2 1 7 7 C 1.37871 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00080 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00365 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.89781 * 59.47432 * 9 7 2 11 11 C 1.54376 * 109.83373 * 180.41047 * 9 7 2 12 12 C 1.55310 * 102.25153 * 140.86560 * 11 9 7 13 13 C 1.54943 * 100.94551 * 325.87073 * 12 11 9 14 14 H 1.09001 * 110.39219 * 277.48999 * 13 12 11 15 15 C 1.50696 * 110.31253 * 155.35880 * 13 12 11 16 16 C 1.35132 * 127.24968 * 102.82996 * 15 13 12 17 17 C 1.37815 * 114.76073 * 180.02562 * 16 15 13 18 18 N 1.30080 * 116.88176 * 0.02562 * 17 16 15 19 19 S 1.69603 * 107.14904 * 359.97438 * 18 17 16 20 20 O 1.43240 * 109.82865 * 298.54740 * 9 7 2 21 21 H 0.96993 * 120.00116 * 0.02562 * 1 2 3 22 22 H 1.09000 * 110.84991 * 259.06060 * 11 9 7 23 23 H 1.09003 * 110.84698 * 22.48082 * 11 9 7 24 24 H 1.08997 * 111.12607 * 207.94479 * 12 11 9 25 25 H 1.09003 * 111.11971 * 83.78743 * 12 11 9 26 26 H 1.08005 * 122.62221 * 359.97438 * 16 15 13 27 27 H 1.08006 * 121.55865 * 179.73219 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6152 -2.5604 -0.8826 11 6 2.2469 -3.6788 0.0116 12 6 1.5536 -4.6864 0.9688 13 6 0.8763 -3.7200 1.9728 14 1 1.5899 -3.3995 2.7319 15 6 -0.3108 -4.3856 2.6199 16 6 -0.3772 -4.9099 3.8636 17 6 -1.5971 -5.4595 4.1939 18 7 -2.5285 -5.4122 3.2869 19 16 -1.8666 -4.6388 1.9303 20 8 0.4501 -2.5978 1.1839 21 1 -0.4850 0.8400 -0.0004 22 1 2.3561 -4.1037 -0.9862 23 1 3.2138 -3.3665 0.4063 24 1 2.2855 -5.3216 1.4676 25 1 0.8127 -5.2852 0.4391 26 1 0.4605 -4.8998 4.5452 27 1 -1.7703 -5.9127 5.1588 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404420034.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:09 Heat of formation + Delta-G solvation = -8.616273 kcal Electronic energy + Delta-G solvation = -13240.187550 eV Core-core repulsion = 10896.642874 eV Total energy + Delta-G solvation = -2343.544676 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.79629 -37.82819 -32.86947 -31.51752 -30.96006 -28.16372 -25.33890 -23.60298 -21.24699 -20.33946 -19.62679 -17.31416 -16.58495 -15.82019 -15.12955 -14.64960 -14.09290 -13.82272 -13.14069 -12.92167 -12.59240 -12.27933 -11.79533 -11.23291 -10.93873 -10.92706 -10.65084 -10.46147 -10.29099 -10.08027 -9.98995 -9.30481 -9.06343 -8.58264 -8.36742 -8.00025 -6.02631 -4.17505 1.06439 1.90752 2.31273 2.76540 3.27862 3.36185 3.38964 4.39827 4.64640 5.08964 5.31182 5.40450 5.43398 5.47155 5.65516 5.89658 6.04136 6.15131 6.21815 6.36815 6.48925 6.58323 6.70729 6.88704 7.55373 7.84309 8.20916 8.44700 8.96258 9.54840 11.03882 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.041767 B = 0.007939 C = 0.007368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.221595 B = 3526.228461 C = 3799.499946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.079 3.921 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.204 3.796 10 H 0.043 0.957 11 C -0.144 4.144 12 C -0.146 4.146 13 C 0.142 3.858 14 H 0.078 0.922 15 C -0.140 4.140 16 C -0.227 4.227 17 C 0.086 3.914 18 N -0.488 5.488 19 S 0.293 5.707 20 O -0.348 6.348 21 H 0.261 0.739 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.152 0.848 27 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.919 -9.571 4.916 10.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.127 4.127 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.584 4.584 8 H 0.079 0.921 9 C 0.149 3.851 10 H 0.060 0.940 11 C -0.181 4.181 12 C -0.185 4.185 13 C 0.081 3.919 14 H 0.096 0.904 15 C -0.270 4.270 16 C -0.261 4.261 17 C -0.111 4.111 18 N -0.309 5.309 19 S 0.446 5.554 20 O -0.268 6.268 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.169 0.831 27 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.219 -9.408 3.662 10.169 hybrid contribution 2.090 0.834 1.421 2.661 sum 0.870 -8.574 5.083 10.005 Atomic orbital electron populations 1.70038 1.06013 1.26557 1.47043 1.25068 0.94729 0.99263 0.93611 0.86601 0.80211 0.83812 0.77689 1.19668 1.20867 1.20866 1.21401 0.92765 0.90604 1.53630 0.92060 1.20388 0.87843 0.92185 0.84687 0.93953 1.23228 1.00509 0.96125 0.98281 1.23290 0.99739 0.97948 0.97495 1.21072 0.88629 0.87887 0.94290 0.90430 1.25949 1.02366 1.00348 0.98357 1.21208 1.00323 1.07274 0.97344 1.22673 0.89488 0.98953 1.00035 1.76640 1.28199 1.22082 1.04015 1.84283 1.00885 1.49931 1.20349 1.88874 1.58740 1.43561 1.35587 0.92905 0.91779 0.91197 0.91103 0.91283 0.83066 0.80725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.38 12.91 55.43 0.72 -24.66 15 2 C 0.08 2.22 5.41 -17.82 -0.10 2.13 15 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 15 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 15 7 C -0.55 -14.92 8.75 -34.44 -0.30 -15.22 15 8 H 0.06 1.62 7.52 -52.49 -0.39 1.23 15 9 C 0.20 5.07 3.36 -27.16 -0.09 4.98 15 10 H 0.04 1.14 8.14 -51.93 -0.42 0.72 15 11 C -0.14 -2.79 6.53 -24.79 -0.16 -2.95 15 12 C -0.15 -2.48 6.56 -24.48 -0.16 -2.64 15 13 C 0.14 2.78 3.95 -26.86 -0.11 2.67 15 14 H 0.08 1.47 8.14 -51.93 -0.42 1.05 15 15 C -0.14 -2.48 5.59 -35.42 -0.20 -2.68 15 16 C -0.23 -3.36 10.17 -40.84 -0.42 -3.77 15 17 C 0.09 1.21 11.27 -18.45 -0.21 1.00 15 18 N -0.49 -8.21 12.09 28.86 0.35 -7.86 15 19 S 0.29 5.28 23.59 -107.50 -2.54 2.75 15 20 O -0.35 -8.72 10.07 -35.23 -0.35 -9.08 15 21 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 22 H 0.06 1.13 8.14 -51.93 -0.42 0.70 15 23 H 0.07 1.34 7.65 -51.93 -0.40 0.94 15 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 25 H 0.07 1.13 8.05 -51.93 -0.42 0.71 15 26 H 0.15 1.82 8.06 -52.48 -0.42 1.39 15 27 H 0.18 1.76 8.06 -52.48 -0.42 1.34 15 LS Contribution 251.33 15.07 3.79 3.79 Total: -1.00 -30.61 251.33 -7.68 -38.29 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: -2.88 Total: -2.83 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -1.74 Total: -16.49 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 1.06 Total: -32.52 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.35 Total: -9.08 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 5.28 SS G_CDS: -2.54 Total: 2.75 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.61 -7.68 -38.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404420034.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.673 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds