Wall clock time and date at job start Mon Mar 30 2020 02:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99800 * 2 1 4 4 H 1.48497 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46925 * 299.99920 * 3 2 1 6 6 H 1.48501 * 109.47045 * 59.99580 * 3 2 1 7 7 C 1.37871 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00080 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00365 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.89781 * 59.47432 * 9 7 2 11 11 C 1.54376 * 109.83373 * 180.41047 * 9 7 2 12 12 C 1.55310 * 102.25153 * 140.86560 * 11 9 7 13 13 C 1.54943 * 100.94551 * 325.87073 * 12 11 9 14 14 H 1.09001 * 110.39219 * 277.48999 * 13 12 11 15 15 C 1.50696 * 110.31253 * 155.35880 * 13 12 11 16 16 C 1.35132 * 127.24968 * 102.82996 * 15 13 12 17 17 C 1.37815 * 114.76073 * 180.02562 * 16 15 13 18 18 N 1.30080 * 116.88176 * 0.02562 * 17 16 15 19 19 S 1.69603 * 107.14904 * 359.97438 * 18 17 16 20 20 O 1.43240 * 109.82865 * 298.54740 * 9 7 2 21 21 H 0.96993 * 120.00116 * 0.02562 * 1 2 3 22 22 H 1.09000 * 110.84991 * 259.06060 * 11 9 7 23 23 H 1.09003 * 110.84698 * 22.48082 * 11 9 7 24 24 H 1.08997 * 111.12607 * 207.94479 * 12 11 9 25 25 H 1.09003 * 111.11971 * 83.78743 * 12 11 9 26 26 H 1.08005 * 122.62221 * 359.97438 * 16 15 13 27 27 H 1.08006 * 121.55865 * 179.73219 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6152 -2.5604 -0.8826 11 6 2.2469 -3.6788 0.0116 12 6 1.5536 -4.6864 0.9688 13 6 0.8763 -3.7200 1.9728 14 1 1.5899 -3.3995 2.7319 15 6 -0.3108 -4.3856 2.6199 16 6 -0.3772 -4.9099 3.8636 17 6 -1.5971 -5.4595 4.1939 18 7 -2.5285 -5.4122 3.2869 19 16 -1.8666 -4.6388 1.9303 20 8 0.4501 -2.5978 1.1839 21 1 -0.4850 0.8400 -0.0004 22 1 2.3561 -4.1037 -0.9862 23 1 3.2138 -3.3665 0.4063 24 1 2.2855 -5.3216 1.4676 25 1 0.8127 -5.2852 0.4391 26 1 0.4605 -4.8998 4.5452 27 1 -1.7703 -5.9127 5.1588 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404420034.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:08 Heat of formation + Delta-G solvation = -28.560456 kcal Electronic energy + Delta-G solvation = -13241.052395 eV Core-core repulsion = 10896.642874 eV Total energy + Delta-G solvation = -2344.409521 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.27919 -39.25577 -34.82694 -33.08414 -32.57101 -29.81548 -27.02494 -25.11354 -22.74749 -22.07403 -20.87386 -18.76599 -18.53348 -17.27302 -16.78249 -16.35302 -15.70645 -15.11009 -14.83811 -14.39294 -13.97465 -13.82077 -13.65228 -12.85048 -12.68924 -12.39511 -12.36667 -12.10893 -12.04204 -11.61178 -11.32094 -11.11510 -10.70818 -10.44623 -9.85715 -9.67199 -8.12321 -6.34354 -0.20777 0.59185 1.05718 1.40501 1.41806 1.53797 1.61683 2.41431 3.03381 3.42036 3.73106 3.84991 4.19607 4.29755 4.31999 4.55685 4.61535 4.68994 4.93214 4.99021 5.02596 5.12613 5.19221 5.61062 5.70800 5.75286 6.18109 6.56341 6.99446 7.43248 8.94649 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.041767 B = 0.007939 C = 0.007368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.221595 B = 3526.228461 C = 3799.499946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 0.958 3.042 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.561 4.561 8 H 0.066 0.934 9 C 0.196 3.804 10 H 0.004 0.996 11 C -0.135 4.135 12 C -0.131 4.131 13 C 0.134 3.866 14 H 0.085 0.915 15 C -0.161 4.161 16 C -0.204 4.204 17 C 0.097 3.903 18 N -0.498 5.498 19 S 0.227 5.773 20 O -0.383 6.383 21 H 0.260 0.740 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.109 0.891 25 H 0.070 0.930 26 H 0.188 0.812 27 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.465 -10.675 6.790 12.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.783 3.217 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.209 1.209 7 C -0.599 4.599 8 H 0.084 0.916 9 C 0.140 3.860 10 H 0.021 0.979 11 C -0.173 4.173 12 C -0.169 4.169 13 C 0.074 3.926 14 H 0.102 0.898 15 C -0.291 4.291 16 C -0.239 4.239 17 C -0.100 4.100 18 N -0.318 5.318 19 S 0.379 5.621 20 O -0.304 6.304 21 H 0.069 0.931 22 H 0.098 0.902 23 H 0.094 0.906 24 H 0.128 0.872 25 H 0.089 0.911 26 H 0.205 0.795 27 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 0.337 -10.527 5.524 11.893 hybrid contribution 1.594 1.082 0.963 2.153 sum 1.931 -9.445 6.487 11.619 Atomic orbital electron populations 1.70194 1.07771 1.27246 1.48910 1.25943 0.95490 1.03061 0.93387 0.85527 0.79373 0.79261 0.77533 1.18311 1.20436 1.20916 1.21857 0.93231 0.91997 1.52781 0.91560 1.20265 0.88196 0.93765 0.83742 0.97866 1.23104 0.99324 0.94743 1.00117 1.23239 1.00097 0.97227 0.96323 1.21271 0.89722 0.87173 0.94447 0.89764 1.25809 1.01331 1.02300 0.99670 1.21641 1.01436 1.04628 0.96186 1.23447 0.88431 0.97137 1.00998 1.76794 1.28761 1.22402 1.03855 1.84478 1.02728 1.52110 1.22750 1.88776 1.59355 1.46290 1.35934 0.93113 0.90214 0.90600 0.87222 0.91091 0.79482 0.75859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.16 12.91 21.45 0.28 -54.88 15 2 C 0.02 1.31 5.41 84.65 0.46 1.77 15 3 Si 0.96 43.83 29.54 68.60 2.03 45.86 15 4 H -0.26 -11.18 7.11 99.48 0.71 -10.48 15 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 6 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 7 C -0.56 -31.05 8.75 25.60 0.22 -30.83 15 8 H 0.07 3.49 7.52 -2.91 -0.02 3.47 15 9 C 0.20 9.98 3.36 30.32 0.10 10.08 15 10 H 0.00 0.20 8.14 -2.39 -0.02 0.18 15 11 C -0.14 -5.11 6.53 31.85 0.21 -4.90 15 12 C -0.13 -4.17 6.56 32.05 0.21 -3.96 15 13 C 0.13 5.10 3.95 30.51 0.12 5.22 15 14 H 0.08 3.04 8.14 -2.39 -0.02 3.02 15 15 C -0.16 -5.50 5.59 24.97 0.14 -5.36 15 16 C -0.20 -5.31 10.17 21.45 0.22 -5.09 15 17 C 0.10 2.39 11.27 84.85 0.96 3.35 15 18 N -0.50 -15.93 12.09 -62.60 -0.76 -16.68 15 19 S 0.23 8.27 23.59 -56.49 -1.33 6.93 15 20 O -0.38 -19.68 10.07 -148.98 -1.50 -21.18 15 21 H 0.26 15.02 8.31 -92.71 -0.77 14.25 15 22 H 0.08 2.72 8.14 -2.39 -0.02 2.70 15 23 H 0.08 2.76 7.65 -2.39 -0.02 2.74 15 24 H 0.11 2.66 8.14 -2.39 -0.02 2.64 15 25 H 0.07 2.24 8.05 -2.39 -0.02 2.22 15 26 H 0.19 3.49 8.06 -2.91 -0.02 3.47 15 27 H 0.23 3.23 8.06 -2.91 -0.02 3.21 15 Total: -1.00 -68.67 251.33 2.52 -66.15 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: 1.17 Total: 3.52 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: 2.64 Total: -29.72 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -0.48 Total: -71.56 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -1.50 Total: -21.18 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 8.27 SS G_CDS: -1.33 Total: 6.93 kcal Total: -68.67 2.52 -66.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404420034.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.592 kcal (2) G-P(sol) polarization free energy of solvation -68.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds