Wall clock time and date at job start Mon Mar 30 2020 02:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.87522 * 58.99373 * 9 7 2 11 11 C 1.54106 * 109.87681 * 179.97438 * 9 7 2 12 12 C 1.54809 * 104.18618 * 121.45296 * 11 9 7 13 13 C 1.54995 * 102.09386 * 20.88127 * 12 11 9 14 14 H 1.09000 * 110.61431 * 81.47798 * 13 12 11 15 15 C 1.50700 * 110.61936 * 204.31591 * 13 12 11 16 16 C 1.35141 * 127.24662 * 264.70989 * 15 13 12 17 17 C 1.37811 * 114.75802 * 179.86343 * 16 15 13 18 18 N 1.30090 * 116.88149 * 0.44584 * 17 16 15 19 19 S 1.69606 * 107.14982 * 359.76032 * 18 17 16 20 20 O 1.43745 * 109.88109 * 297.82825 * 9 7 2 21 21 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 22 22 H 1.08997 * 110.48754 * 240.13108 * 11 9 7 23 23 H 1.09005 * 110.48586 * 2.64387 * 11 9 7 24 24 H 1.09004 * 110.90495 * 139.07794 * 12 11 9 25 25 H 1.08995 * 110.90846 * 262.68098 * 12 11 9 26 26 H 1.07997 * 122.62441 * 0.03707 * 16 15 13 27 27 H 1.08001 * 121.55932 * 180.20593 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 1 0.6087 -2.5516 -0.8916 11 6 2.2439 -3.6776 -0.0186 12 6 1.8895 -4.4790 1.2576 13 6 0.4396 -4.0110 1.5428 14 1 -0.2694 -4.5575 0.9209 15 6 0.1043 -4.1814 3.0021 16 6 -0.5270 -5.2275 3.5796 17 6 -0.6993 -5.1168 4.9424 18 7 -0.2508 -4.0335 5.5059 19 16 0.4380 -3.0818 4.2826 20 8 0.4595 -2.6128 1.1821 21 1 -0.4850 0.8401 0.0040 22 1 2.1009 -4.2924 -0.9072 23 1 3.2698 -3.3123 0.0304 24 1 1.9212 -5.5514 1.0648 25 1 2.5529 -4.2133 2.0806 26 1 -0.8672 -6.0846 3.0175 27 1 -1.1874 -5.8915 5.5152 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404420036.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:13 Heat of formation + Delta-G solvation = -28.213843 kcal Electronic energy + Delta-G solvation = -13260.308769 eV Core-core repulsion = 10915.914279 eV Total energy + Delta-G solvation = -2344.394490 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.25761 -39.24696 -34.84708 -33.09055 -32.55733 -29.80738 -26.99588 -25.10858 -22.96616 -21.89869 -20.77385 -18.88068 -18.65071 -16.88569 -16.78101 -16.33262 -15.77683 -15.15361 -15.04857 -14.32274 -14.14455 -13.87596 -13.51234 -12.86213 -12.62026 -12.46144 -12.33718 -12.05787 -12.00302 -11.55021 -11.28538 -11.09196 -10.72266 -10.44476 -9.96296 -9.68444 -8.15658 -6.35541 -0.19764 0.59337 1.08129 1.40297 1.42204 1.51752 1.62588 2.40633 2.99320 3.40095 3.78348 3.94414 4.16874 4.30257 4.32103 4.48884 4.62062 4.73155 4.93297 4.98877 5.03970 5.15339 5.22883 5.52435 5.71699 5.73619 6.16457 6.50223 6.93245 7.40388 8.92182 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.035586 B = 0.008825 C = 0.007732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.630196 B = 3171.942466 C = 3620.430810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.025 3.975 3 Si 0.955 3.045 4 H -0.278 1.278 5 H -0.259 1.259 6 H -0.281 1.281 7 C -0.552 4.552 8 H 0.065 0.935 9 C 0.195 3.805 10 H -0.001 1.001 11 C -0.138 4.138 12 C -0.125 4.125 13 C 0.124 3.876 14 H 0.090 0.910 15 C -0.157 4.157 16 C -0.201 4.201 17 C 0.097 3.903 18 N -0.500 5.500 19 S 0.225 5.775 20 O -0.379 6.379 21 H 0.261 0.739 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.108 0.892 25 H 0.063 0.937 26 H 0.192 0.808 27 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.562 -12.025 4.875 12.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.183 1.183 6 H -0.207 1.207 7 C -0.589 4.589 8 H 0.084 0.916 9 C 0.139 3.861 10 H 0.016 0.984 11 C -0.176 4.176 12 C -0.163 4.163 13 C 0.064 3.936 14 H 0.107 0.893 15 C -0.287 4.287 16 C -0.236 4.236 17 C -0.101 4.101 18 N -0.320 5.320 19 S 0.378 5.622 20 O -0.299 6.299 21 H 0.070 0.930 22 H 0.098 0.902 23 H 0.087 0.913 24 H 0.127 0.873 25 H 0.081 0.919 26 H 0.209 0.791 27 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.946 -10.032 6.249 11.857 hybrid contribution -0.377 -0.406 -1.139 1.267 sum 0.568 -10.438 5.110 11.635 Atomic orbital electron populations 1.70163 1.07661 1.27393 1.48731 1.25921 0.95551 1.02987 0.93304 0.85615 0.79079 0.79030 0.78291 1.20346 1.18342 1.20651 1.21621 0.93034 0.91484 1.52805 0.91638 1.20262 0.88008 0.94157 0.83669 0.98359 1.22956 1.00397 0.96355 0.97870 1.23042 0.94207 1.01350 0.97728 1.21474 0.97704 0.87025 0.87436 0.89292 1.25524 1.02715 0.99564 1.00870 1.21627 1.04787 1.02080 0.95075 1.23478 0.97128 0.96044 0.93404 1.76800 1.20496 1.09918 1.24801 1.84747 1.56225 1.27085 0.94179 1.89276 1.73437 1.21019 1.46166 0.93005 0.90240 0.91340 0.87333 0.91858 0.79072 0.75766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.85 12.95 21.45 0.28 -54.58 15 2 C 0.02 1.40 5.42 84.66 0.46 1.86 15 3 Si 0.96 44.31 29.54 68.60 2.03 46.33 15 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15 5 H -0.26 -11.35 7.11 99.48 0.71 -10.65 15 6 H -0.28 -12.72 7.11 99.48 0.71 -12.02 15 7 C -0.55 -30.93 8.78 25.60 0.22 -30.71 15 8 H 0.07 3.52 7.33 -2.91 -0.02 3.50 15 9 C 0.19 9.91 3.24 30.22 0.10 10.01 15 10 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 15 11 C -0.14 -5.28 6.63 31.59 0.21 -5.07 15 12 C -0.12 -4.07 6.57 31.89 0.21 -3.86 15 13 C 0.12 4.65 3.85 30.53 0.12 4.76 15 14 H 0.09 3.02 8.14 -2.39 -0.02 3.00 15 15 C -0.16 -5.36 5.68 24.97 0.14 -5.21 15 16 C -0.20 -5.07 10.17 21.45 0.22 -4.85 15 17 C 0.10 2.36 11.27 84.85 0.96 3.32 15 18 N -0.50 -16.22 12.09 -62.58 -0.76 -16.98 15 19 S 0.23 8.52 23.47 -56.49 -1.33 7.20 15 20 O -0.38 -19.43 10.21 -148.98 -1.52 -20.95 15 21 H 0.26 15.05 8.31 -92.70 -0.77 14.28 15 22 H 0.08 2.60 8.14 -2.39 -0.02 2.58 15 23 H 0.07 2.63 7.40 -2.38 -0.02 2.62 15 24 H 0.11 2.62 8.14 -2.39 -0.02 2.60 15 25 H 0.06 2.14 8.05 -2.39 -0.02 2.12 15 26 H 0.19 3.27 8.06 -2.91 -0.02 3.24 15 27 H 0.23 3.14 8.06 -2.91 -0.02 3.12 15 Total: -1.00 -69.00 250.97 2.50 -66.50 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: 1.17 Total: 2.24 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 2.63 Total: -29.76 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -0.48 Total: -71.56 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -1.52 Total: -20.95 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 8.52 SS G_CDS: -1.33 Total: 7.20 kcal Total: -69.00 2.50 -66.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404420036.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.285 kcal (2) G-P(sol) polarization free energy of solvation -69.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds