Wall clock time and date at job start Mon Mar 30 2020 02:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47553 * 249.03694 * 3 2 1 5 5 N 1.46495 * 109.47499 * 180.02562 * 4 3 2 6 6 C 1.35716 * 126.53062 * 269.68761 * 5 4 3 7 7 Cl 1.73590 * 125.25314 * 359.97438 * 6 5 4 8 8 N 1.31199 * 109.49526 * 179.81867 * 6 5 4 9 9 C 1.32984 * 110.02425 * 0.45516 * 8 6 5 10 10 C 1.38541 * 126.53946 * 89.99664 * 5 4 3 11 11 C 1.40032 * 127.02793 * 359.97438 * 10 5 4 12 12 H 1.07997 * 120.00304 * 341.21918 * 11 10 5 13 13 C 1.40048 * 119.99695 * 161.22006 * 11 10 5 14 14 N 1.30874 * 119.99604 * 164.64167 * 13 11 10 15 15 Si 1.86800 * 119.99852 * 344.64054 * 13 11 10 16 16 H 1.48500 * 109.47127 * 90.63739 * 15 13 11 17 17 H 1.48508 * 109.46746 * 210.63546 * 15 13 11 18 18 H 1.48500 * 109.47139 * 330.63243 * 15 13 11 19 19 H 1.08998 * 109.47266 * 9.03991 * 3 2 1 20 20 H 1.09001 * 109.46913 * 129.03672 * 3 2 1 21 21 H 1.09003 * 109.46822 * 300.00023 * 4 3 2 22 22 H 1.09004 * 109.47287 * 59.99330 * 4 3 2 23 23 H 1.08004 * 126.19699 * 179.75998 * 9 8 6 24 24 H 0.97004 * 119.99693 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.5169 1.3470 5 7 4.5828 0.5182 1.3467 6 6 5.3916 -0.4974 1.7421 7 17 4.8503 -2.0343 2.3409 8 7 6.6457 -0.1396 1.5989 9 6 6.7139 1.1007 1.1239 10 6 5.4067 1.5583 0.9485 11 6 5.0094 2.8121 0.4676 12 1 4.0073 2.9531 0.0906 13 6 5.9117 3.8831 0.4758 14 7 5.6616 4.9548 -0.2326 15 14 7.4722 3.7820 1.4976 16 1 8.5666 3.2075 0.6745 17 1 7.8560 5.1431 1.9510 18 1 7.2345 2.9152 2.6797 19 1 2.9718 -1.0140 -0.1615 20 1 2.9710 0.6481 -0.7982 21 1 2.7541 1.5317 1.5084 22 1 2.7547 -0.1304 2.1453 23 1 7.6171 1.6536 0.9117 24 1 6.2867 5.6965 -0.2273 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000521402133.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:38 Heat of formation + Delta-G solvation = 50.458234 kcal Electronic energy + Delta-G solvation = -12834.395877 eV Core-core repulsion = 10387.828814 eV Total energy + Delta-G solvation = -2446.567063 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.036 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.18442 -38.02150 -37.54268 -35.59413 -35.51299 -31.84938 -31.07919 -26.43677 -25.49065 -22.67691 -21.10137 -19.23923 -18.63537 -17.96414 -16.70408 -16.19033 -16.02010 -15.48184 -15.19935 -14.69309 -14.18758 -13.99585 -13.57858 -13.51081 -13.04802 -12.92900 -12.81114 -12.33371 -12.14028 -12.03503 -11.67259 -11.24593 -10.61061 -10.36178 -9.19656 -8.89466 -6.44837 0.77941 1.03718 1.39348 1.50071 1.57879 1.68232 1.72337 2.17901 2.29041 2.29331 3.05031 3.16675 3.82158 3.93042 4.31287 4.38226 4.58516 4.82364 4.86494 5.15834 5.34588 5.80201 6.19789 6.23394 6.47490 6.61950 6.78754 7.43494 8.16170 Molecular weight = 225.04amu Principal moments of inertia in cm(-1) A = 0.023600 B = 0.011364 C = 0.007909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.170332 B = 2463.349992 C = 3539.589566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.246 3.754 3 C -0.033 4.033 4 C 0.121 3.879 5 N -0.479 5.479 6 C 0.150 3.850 7 Cl 0.017 6.983 8 N -0.466 5.466 9 C -0.211 4.211 10 C 0.198 3.802 11 C -0.450 4.450 12 H 0.084 0.916 13 C 0.072 3.928 14 N -0.831 5.831 15 Si 0.958 3.042 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.260 1.260 19 H 0.131 0.869 20 H 0.120 0.880 21 H 0.098 0.902 22 H 0.110 0.890 23 H 0.148 0.852 24 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.799 -6.333 2.309 6.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.072 4.072 3 C -0.074 4.074 4 C -0.003 4.003 5 N -0.174 5.174 6 C -0.129 4.129 7 Cl 0.045 6.955 8 N -0.186 5.186 9 C -0.357 4.357 10 C 0.085 3.915 11 C -0.485 4.485 12 H 0.102 0.898 13 C -0.147 4.147 14 N -0.457 5.457 15 Si 0.784 3.216 16 H -0.188 1.188 17 H -0.207 1.207 18 H -0.184 1.184 19 H 0.149 0.851 20 H 0.138 0.862 21 H 0.116 0.884 22 H 0.128 0.872 23 H 0.165 0.835 24 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.961 -6.786 2.468 7.805 hybrid contribution 0.362 0.596 0.016 0.698 sum -2.600 -6.190 2.484 7.158 Atomic orbital electron populations 1.81237 1.13961 1.10688 1.09725 1.28901 0.94674 0.91551 0.92025 1.19633 0.80703 1.06720 1.00297 1.21551 0.76489 1.04767 0.97444 1.45018 1.06135 1.12684 1.53610 1.22449 0.86102 0.88255 1.16104 1.98296 1.88673 1.22277 1.86304 1.69126 1.18174 1.14476 1.16837 1.22097 0.95676 0.94200 1.23733 1.18873 0.88837 0.88471 0.95368 1.18217 1.01346 0.91376 1.37523 0.89791 1.26273 1.00930 0.93765 0.93753 1.69612 1.38065 1.06387 1.31622 0.85649 0.78532 0.76715 0.80742 1.18843 1.20711 1.18428 0.85125 0.86218 0.88375 0.87219 0.83545 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -14.52 18.54 20.00 0.37 -14.15 14 2 C 0.25 6.23 15.43 89.44 1.38 7.61 14 3 C -0.03 -0.75 6.03 28.79 0.17 -0.58 14 4 C 0.12 3.38 5.77 86.38 0.50 3.88 14 5 N -0.48 -18.04 2.82 -507.97 -1.43 -19.47 14 6 C 0.15 5.88 8.50 179.84 1.53 7.41 14 7 Cl 0.02 0.52 28.75 -2.72 -0.08 0.44 14 8 N -0.47 -21.35 11.18 -187.28 -2.09 -23.45 14 9 C -0.21 -9.98 9.25 84.85 0.78 -9.20 14 10 C 0.20 8.88 6.30 38.85 0.24 9.13 14 11 C -0.45 -21.23 9.45 23.14 0.22 -21.01 14 12 H 0.08 4.00 7.94 -2.91 -0.02 3.98 14 13 C 0.07 3.40 5.51 85.27 0.47 3.87 14 14 N -0.83 -40.24 13.93 21.85 0.30 -39.93 14 15 Si 0.96 39.96 24.53 68.60 1.68 41.64 14 16 H -0.26 -10.73 6.68 99.48 0.66 -10.07 14 17 H -0.28 -11.00 7.11 99.48 0.71 -10.30 14 18 H -0.26 -11.55 6.56 99.48 0.65 -10.89 14 19 H 0.13 2.59 8.14 -2.39 -0.02 2.57 14 20 H 0.12 2.92 8.14 -2.39 -0.02 2.90 14 21 H 0.10 2.81 7.81 -2.39 -0.02 2.79 14 22 H 0.11 2.57 7.79 -2.38 -0.02 2.55 14 23 H 0.15 6.90 4.21 -2.91 -0.01 6.88 14 24 H 0.30 13.11 8.30 -92.71 -0.77 12.34 14 Total: -1.00 -56.26 238.68 5.20 -51.06 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: 1.14 Total: 2.75 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 5.30 Total: 1.11 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -2.85 Total: -97.00 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 1.68 Total: 41.64 kcal Atomic # 17 Polarization: 0.52 SS G_CDS: -0.08 Total: 0.44 kcal Total: -56.26 5.20 -51.06 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521402133.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.517 kcal (2) G-P(sol) polarization free energy of solvation -56.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds