Wall clock time and date at job start Mon Mar 30 2020 02:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86803 * 120.00116 * 2 1 4 4 H 1.48499 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47039 * 299.99774 * 3 2 1 6 6 H 1.48501 * 109.47064 * 59.99370 * 3 2 1 7 7 C 1.40145 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99733 * 180.02562 * 7 2 1 9 9 C 1.41776 * 120.00180 * 0.02562 * 7 2 1 10 10 O 1.21787 * 119.99921 * 0.02562 * 9 7 2 11 11 N 1.34776 * 120.00290 * 179.97438 * 9 7 2 12 12 C 1.39637 * 120.00041 * 185.02562 * 11 9 7 13 13 C 1.39536 * 120.12216 * 90.19197 * 12 11 9 14 14 O 1.35930 * 120.08671 * 0.27666 * 13 12 11 15 15 C 1.38534 * 119.83490 * 179.97438 * 13 12 11 16 16 C 1.38292 * 120.06758 * 0.02562 * 15 13 12 17 17 C 1.38343 * 120.24819 * 359.97438 * 16 15 13 18 18 C 1.38314 * 120.17045 * 0.02562 * 17 16 15 19 19 F 1.35099 * 120.03893 * 180.02562 * 18 17 16 20 20 H 0.96999 * 119.99769 * 0.02562 * 1 2 3 21 21 H 0.96996 * 119.99594 * 5.02829 * 11 9 7 22 22 H 0.96705 * 113.99898 * 269.72239 * 14 13 12 23 23 H 1.07998 * 119.96663 * 180.02562 * 15 13 12 24 24 H 1.08007 * 119.87549 * 180.02562 * 16 15 13 25 25 H 1.07997 * 119.91539 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3464 0.0006 5 1 1.8816 2.3964 -1.2126 6 1 1.8815 2.3965 1.2124 7 6 2.0070 -1.2137 0.0005 8 1 3.0870 -1.2136 0.0010 9 6 1.2982 -2.4415 0.0005 10 8 0.0803 -2.4415 -0.0004 11 7 1.9720 -3.6087 0.0005 12 6 1.2778 -4.8157 -0.1054 13 6 1.0248 -5.3701 -1.3606 14 8 1.4583 -4.7395 -2.4840 15 6 0.3360 -6.5681 -1.4588 16 6 -0.1000 -7.2123 -0.3154 17 6 0.1492 -6.6654 0.9307 18 6 0.8360 -5.4699 1.0404 19 9 1.0783 -4.9384 2.2586 20 1 -0.4850 0.8401 -0.0004 21 1 2.9392 -3.6103 0.0742 22 1 0.8207 -4.1142 -2.8550 23 1 0.1394 -6.9993 -2.4292 24 1 -0.6363 -8.1464 -0.3955 25 1 -0.1941 -7.1729 1.8200 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606267283.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:03 Heat of formation + Delta-G solvation = -97.622951 kcal Electronic energy + Delta-G solvation = -15135.431528 eV Core-core repulsion = 12221.814057 eV Total energy + Delta-G solvation = -2913.617471 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.29850 -39.44324 -37.12469 -36.05289 -33.43451 -32.31215 -29.45270 -28.78187 -26.33585 -22.39397 -22.22139 -20.00981 -18.15775 -17.59121 -16.48313 -16.20494 -15.82713 -15.46273 -14.91283 -14.36454 -14.16115 -13.87843 -13.35965 -12.55216 -12.42047 -11.95666 -11.54296 -11.43395 -11.20185 -11.00707 -10.57262 -10.44377 -10.23821 -8.96469 -8.33357 -8.26599 -7.82808 -7.70412 -6.30951 -4.82595 1.45603 1.52131 3.07630 3.16485 3.21530 3.76376 4.03770 4.43718 4.45489 4.67373 4.90453 5.13387 5.34830 5.52364 5.82482 5.95784 6.23925 6.39023 6.52199 6.67433 7.04516 7.31365 7.88672 7.96179 8.11700 8.31505 8.88764 9.40225 10.46982 10.69553 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.042589 B = 0.008372 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.290440 B = 3343.547438 C = 3642.638706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.089 3.911 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.557 3.443 10 O -0.580 6.580 11 N -0.721 5.721 12 C 0.125 3.875 13 C 0.129 3.871 14 O -0.490 6.490 15 C -0.158 4.158 16 C -0.091 4.091 17 C -0.166 4.166 18 C 0.110 3.890 19 F -0.131 7.131 20 H 0.270 0.730 21 H 0.392 0.608 22 H 0.396 0.604 23 H 0.130 0.870 24 H 0.131 0.869 25 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.680 -9.648 -1.673 9.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.133 4.133 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.366 3.634 10 O -0.464 6.464 11 N -0.376 5.376 12 C 0.030 3.970 13 C 0.082 3.918 14 O -0.301 6.301 15 C -0.177 4.177 16 C -0.110 4.110 17 C -0.185 4.185 18 C 0.088 3.912 19 F -0.110 7.110 20 H 0.081 0.919 21 H 0.227 0.773 22 H 0.253 0.747 23 H 0.148 0.852 24 H 0.149 0.851 25 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.139 -9.793 -1.561 9.982 hybrid contribution 0.493 1.206 0.193 1.317 sum 1.632 -8.587 -1.369 8.848 Atomic orbital electron populations 1.70037 1.07271 1.27514 1.33263 1.25757 0.94601 1.00593 0.92369 0.86256 0.80604 0.81255 0.78330 1.18567 1.19996 1.20013 1.20038 0.94329 0.89895 1.53251 0.91240 1.17016 0.87365 0.81815 0.77250 1.90660 1.13774 1.86286 1.55664 1.43766 1.08964 1.02685 1.82161 1.18073 0.98929 0.89367 0.90631 1.18700 0.95160 0.92145 0.85792 1.84673 1.45929 1.59944 1.39522 1.21312 1.00471 0.96514 0.99390 1.20721 0.99478 0.99724 0.91043 1.21014 1.02589 0.95743 0.99193 1.18154 0.99477 0.93124 0.80417 1.91480 1.92322 1.86171 1.41016 0.91895 0.77260 0.74709 0.85226 0.85105 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -22.24 11.73 55.56 0.65 -21.59 15 2 C 0.09 2.45 5.50 -17.35 -0.10 2.35 15 3 Si 0.91 19.85 29.56 -169.99 -5.02 14.83 15 4 H -0.26 -5.52 7.11 56.52 0.40 -5.12 15 5 H -0.27 -5.83 7.11 56.52 0.40 -5.42 15 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 7 C -0.54 -15.20 9.31 -37.52 -0.35 -15.55 15 8 H 0.07 1.80 7.85 -52.49 -0.41 1.39 15 9 C 0.56 15.99 7.53 -14.91 -0.11 15.88 15 10 O -0.58 -18.83 14.86 5.11 0.08 -18.75 15 11 N -0.72 -17.17 4.81 -12.25 -0.06 -17.23 15 12 C 0.13 2.70 5.30 -83.49 -0.44 2.26 15 13 C 0.13 2.44 6.73 -38.99 -0.26 2.17 15 14 O -0.49 -8.97 13.25 -19.52 -0.26 -9.23 15 15 C -0.16 -2.40 9.98 -39.45 -0.39 -2.79 15 16 C -0.09 -1.26 10.04 -39.52 -0.40 -1.66 15 17 C -0.17 -2.63 10.02 -39.51 -0.40 -3.03 15 18 C 0.11 2.22 7.31 -39.22 -0.29 1.93 15 19 F -0.13 -2.86 17.08 2.25 0.04 -2.82 15 20 H 0.27 7.18 8.29 -40.82 -0.34 6.84 15 21 H 0.39 8.38 8.78 -40.82 -0.36 8.03 15 22 H 0.40 6.44 9.06 45.56 0.41 6.85 15 23 H 0.13 1.60 8.06 -52.49 -0.42 1.18 15 24 H 0.13 1.30 8.06 -52.48 -0.42 0.88 15 25 H 0.13 1.72 8.06 -52.49 -0.42 1.29 15 LS Contribution 242.49 15.07 3.65 3.65 Total: -1.00 -34.74 242.49 -4.42 -39.16 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -0.76 Total: 10.42 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -2.74 Total: 1.57 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.59 Total: -38.82 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.18 Total: -27.99 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -34.74 -4.42 -39.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606267283.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.466 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds