Wall clock time and date at job start Mon Mar 30 2020 02:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86803 * 120.00116 * 2 1 4 4 H 1.48499 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47039 * 299.99774 * 3 2 1 6 6 H 1.48501 * 109.47064 * 59.99370 * 3 2 1 7 7 C 1.40145 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99733 * 180.02562 * 7 2 1 9 9 C 1.41776 * 120.00180 * 0.02562 * 7 2 1 10 10 O 1.21787 * 119.99921 * 0.02562 * 9 7 2 11 11 N 1.34776 * 120.00290 * 179.97438 * 9 7 2 12 12 C 1.39637 * 120.00041 * 185.02562 * 11 9 7 13 13 C 1.39536 * 120.12216 * 90.19197 * 12 11 9 14 14 O 1.35930 * 120.08671 * 0.27666 * 13 12 11 15 15 C 1.38534 * 119.83490 * 179.97438 * 13 12 11 16 16 C 1.38292 * 120.06758 * 0.02562 * 15 13 12 17 17 C 1.38343 * 120.24819 * 359.97438 * 16 15 13 18 18 C 1.38314 * 120.17045 * 0.02562 * 17 16 15 19 19 F 1.35099 * 120.03893 * 180.02562 * 18 17 16 20 20 H 0.96999 * 119.99769 * 0.02562 * 1 2 3 21 21 H 0.96996 * 119.99594 * 5.02829 * 11 9 7 22 22 H 0.96705 * 113.99898 * 269.72239 * 14 13 12 23 23 H 1.07998 * 119.96663 * 180.02562 * 15 13 12 24 24 H 1.08007 * 119.87549 * 180.02562 * 16 15 13 25 25 H 1.07997 * 119.91539 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3464 0.0006 5 1 1.8816 2.3964 -1.2126 6 1 1.8815 2.3965 1.2124 7 6 2.0070 -1.2137 0.0005 8 1 3.0870 -1.2136 0.0010 9 6 1.2982 -2.4415 0.0005 10 8 0.0803 -2.4415 -0.0004 11 7 1.9720 -3.6087 0.0005 12 6 1.2778 -4.8157 -0.1054 13 6 1.0248 -5.3701 -1.3606 14 8 1.4583 -4.7395 -2.4840 15 6 0.3360 -6.5681 -1.4588 16 6 -0.1000 -7.2123 -0.3154 17 6 0.1492 -6.6654 0.9307 18 6 0.8360 -5.4699 1.0404 19 9 1.0783 -4.9384 2.2586 20 1 -0.4850 0.8401 -0.0004 21 1 2.9392 -3.6103 0.0742 22 1 0.8207 -4.1142 -2.8550 23 1 0.1394 -6.9993 -2.4292 24 1 -0.6363 -8.1464 -0.3955 25 1 -0.1941 -7.1729 1.8200 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606267283.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:03 Heat of formation + Delta-G solvation = -125.229598 kcal Electronic energy + Delta-G solvation = -15136.628642 eV Core-core repulsion = 12221.814057 eV Total energy + Delta-G solvation = -2914.814585 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.88069 -40.95345 -39.08244 -37.42412 -35.33059 -34.43544 -30.83623 -30.40840 -28.31926 -23.97435 -23.60648 -21.88364 -19.61104 -19.56914 -18.04189 -17.71303 -17.62612 -17.24087 -16.52796 -15.88313 -15.73326 -15.46712 -14.83792 -14.55807 -14.40966 -13.32716 -13.12209 -12.93216 -12.84773 -12.70444 -12.58129 -12.01663 -11.85093 -11.00645 -10.06880 -9.78989 -9.62779 -9.62630 -8.38850 -7.03012 0.11709 0.14315 1.36949 1.38280 1.56716 2.20828 2.36780 2.44422 2.95903 3.10567 3.52216 3.57194 3.99334 4.20543 4.34756 4.59274 4.91232 5.13730 5.21987 5.27157 5.31834 5.74585 5.87443 6.09102 6.29472 6.71279 6.74754 7.38955 8.40225 8.58685 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.042589 B = 0.008372 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.290440 B = 3343.547438 C = 3642.638706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.034 3.966 3 Si 1.001 2.999 4 H -0.249 1.249 5 H -0.263 1.263 6 H -0.267 1.267 7 C -0.570 4.570 8 H 0.084 0.916 9 C 0.545 3.455 10 O -0.629 6.629 11 N -0.713 5.713 12 C 0.074 3.926 13 C 0.109 3.891 14 O -0.498 6.498 15 C -0.145 4.145 16 C -0.069 4.069 17 C -0.157 4.157 18 C 0.073 3.927 19 F -0.152 7.152 20 H 0.278 0.722 21 H 0.398 0.602 22 H 0.400 0.600 23 H 0.167 0.833 24 H 0.187 0.813 25 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.826 -10.803 -2.253 11.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.184 4.184 3 Si 0.820 3.180 4 H -0.172 1.172 5 H -0.187 1.187 6 H -0.192 1.192 7 C -0.605 4.605 8 H 0.102 0.898 9 C 0.355 3.645 10 O -0.517 6.517 11 N -0.366 5.366 12 C -0.020 4.020 13 C 0.062 3.938 14 O -0.309 6.309 15 C -0.163 4.163 16 C -0.086 4.086 17 C -0.176 4.176 18 C 0.052 3.948 19 F -0.131 7.131 20 H 0.089 0.911 21 H 0.234 0.766 22 H 0.258 0.742 23 H 0.184 0.816 24 H 0.204 0.796 25 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.317 -11.003 -2.145 11.287 hybrid contribution 0.409 1.387 0.348 1.487 sum 1.726 -9.616 -1.798 9.934 Atomic orbital electron populations 1.70175 1.09645 1.29316 1.34126 1.27011 0.95502 1.05036 0.90861 0.84922 0.79252 0.74977 0.78833 1.17189 1.18748 1.19176 1.20562 0.95284 0.90778 1.53880 0.89767 1.17307 0.86964 0.83432 0.76830 1.90597 1.15663 1.87432 1.57964 1.43282 1.09214 1.02941 1.81206 1.18530 1.01508 0.89311 0.92622 1.18992 0.96364 0.93674 0.84766 1.84644 1.46641 1.60252 1.39369 1.21749 0.98186 0.94580 1.01825 1.21377 0.97333 1.00649 0.89269 1.21465 1.00606 0.93861 1.01660 1.18619 1.01623 0.95190 0.79361 1.91415 1.92795 1.86839 1.42069 0.91134 0.76579 0.74236 0.81579 0.79609 0.81849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.87 11.73 21.85 0.26 -48.62 15 2 C 0.03 1.87 5.50 85.33 0.47 2.34 15 3 Si 1.00 40.82 29.56 68.60 2.03 42.85 15 4 H -0.25 -9.50 7.11 99.48 0.71 -8.79 15 5 H -0.26 -10.15 7.11 99.48 0.71 -9.44 15 6 H -0.27 -10.47 7.11 99.48 0.71 -9.76 15 7 C -0.57 -32.98 9.31 23.61 0.22 -32.76 15 8 H 0.08 4.43 7.85 -2.91 -0.02 4.41 15 9 C 0.55 32.70 7.53 85.12 0.64 33.34 15 10 O -0.63 -42.75 14.86 -4.63 -0.07 -42.81 15 11 N -0.71 -35.49 4.81 -310.86 -1.50 -36.98 15 12 C 0.07 3.30 5.30 38.43 0.20 3.50 15 13 C 0.11 4.06 6.73 22.65 0.15 4.21 15 14 O -0.50 -18.37 13.25 -92.76 -1.23 -19.60 15 15 C -0.14 -3.92 9.98 22.35 0.22 -3.70 15 16 C -0.07 -1.58 10.04 22.31 0.22 -1.36 15 17 C -0.16 -4.58 10.02 22.31 0.22 -4.35 15 18 C 0.07 2.98 7.31 22.50 0.16 3.14 15 19 F -0.15 -6.89 17.08 44.97 0.77 -6.12 15 20 H 0.28 15.14 8.29 -92.71 -0.77 14.37 15 21 H 0.40 17.90 8.78 -92.71 -0.81 17.09 15 22 H 0.40 13.43 9.06 -74.05 -0.67 12.76 15 23 H 0.17 3.29 8.06 -2.91 -0.02 3.27 15 24 H 0.19 2.34 8.06 -2.91 -0.02 2.32 15 25 H 0.16 3.66 8.06 -2.91 -0.02 3.64 15 Total: -1.00 -79.61 242.49 2.55 -77.06 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: -0.23 Total: 29.86 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 2.52 Total: 4.38 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -1.24 Total: -85.60 kcal Atomic # 8 Polarization: -61.11 SS G_CDS: -1.30 Total: -62.41 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 0.77 Total: -6.12 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -79.61 2.55 -77.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606267283.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.174 kcal (2) G-P(sol) polarization free energy of solvation -79.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds